Single-cell meta-analysis of SARS-CoV-2 entry genes across tissues and demographics C Muus, MD Luecken, G Eraslan, L Sikkema, A Waghray, G Heimberg, ... Nature medicine 27 (3), 546-559, 2021 | 562* | 2021 |
Squidpy: a scalable framework for spatial omics analysis G Palla, H Spitzer, M Klein, D Fischer, AC Schaar, LB Kuemmerle, ... Nature Methods, 1-8, 2022 | 420 | 2022 |
Ultra-high sensitivity mass spectrometry quantifies single-cell proteome changes upon perturbation AD Brunner, M Thielert, C Vasilopoulou, C Ammar, F Coscia, A Mund, ... Molecular Systems Biology 18 (3), e10798, 2022 | 373 | 2022 |
Single cells make big data: new challenges and opportunities in transcriptomics P Angerer, L Simon, S Tritschler, FA Wolf, D Fischer, FJ Theis Current Opinion in Systems Biology 4, 85-91, 2017 | 211 | 2017 |
Concepts and limitations for learning developmental trajectories from single cell genomics S Tritschler, M Büttner, DS Fischer, M Lange, V Bergen, H Lickert, ... Development 146 (12), 2019 | 184 | 2019 |
Spatial components of molecular tissue biology G Palla, DS Fischer, A Regev, FJ Theis Nature Biotechnology 40 (3), 308-318, 2022 | 183 | 2022 |
Impulse model-based differential expression analysis of time course sequencing data DS Fischer, FJ Theis, N Yosef Nucleic acids research 46 (20), e119-e119, 2018 | 118 | 2018 |
Inferring population dynamics from single-cell RNA-sequencing time series data DS Fischer, AK Fiedler, EM Kernfeld, RMJ Genga, A Bastidas-Ponce, ... Nature biotechnology 37 (4), 461-468, 2019 | 114 | 2019 |
Modeling intercellular communication in tissues using spatial graphs of cells DS Fischer, AC Schaar, FJ Theis Nature Biotechnology, 1-5, 2022 | 112* | 2022 |
Predicting antigen specificity of single T cells based on TCR CDR 3 regions DS Fischer, Y Wu, B Schubert, FJ Theis Molecular systems biology 16 (8), e9416, 2020 | 96 | 2020 |
EpiScanpy: integrated single-cell epigenomic analysis A Danese, ML Richter, K Chaichoompu, DS Fischer, FJ Theis, ... Nature Communications 12 (1), 1-8, 2021 | 81 | 2021 |
The scverse project provides a computational ecosystem for single-cell omics data analysis I Virshup, D Bredikhin, L Heumos, G Palla, G Sturm, A Gayoso, I Kats, ... Nature biotechnology 41 (5), 604-606, 2023 | 73 | 2023 |
MPRAnalyze: statistical framework for massively parallel reporter assays T Ashuach, DS Fischer, A Kreimer, N Ahituv, FJ Theis, N Yosef Genome biology 20, 1-17, 2019 | 68 | 2019 |
Group testing for SARS-CoV-2 allows for up to 10-fold efficiency increase across realistic scenarios and testing strategies CM Verdun, T Fuchs, P Harar, D Elbrächter, DS Fischer, J Berner, ... Frontiers in Public Health 9, 583377, 2021 | 65 | 2021 |
Cell-type-specific impact of glucocorticoid receptor activation on the developing brain: a cerebral organoid study C Cruceanu, L Dony, AC Krontira, DS Fischer, S Roeh, R Di Giaimo, ... American Journal of Psychiatry 179 (5), 375-387, 2022 | 56* | 2022 |
Graph representation learning for single-cell biology L Hetzel, DS Fischer, S Günnemann, FJ Theis Current Opinion in Systems Biology 28, 100347, 2021 | 34 | 2021 |
Toward modeling metabolic state from single-cell transcriptomics K Hrovatin, DS Fischer, FJ Theis Molecular Metabolism 57, 101396, 2022 | 32 | 2022 |
Single-cell RNA sequencing reveals ex vivo signatures of SARS-CoV-2-reactive T cells through ‘reverse phenotyping’ DS Fischer, M Ansari, KI Wagner, S Jarosch, Y Huang, CH Mayr, M Strunz, ... Nature Communications 12 (1), 1-14, 2021 | 31 | 2021 |
Sfaira accelerates data and model reuse in single cell genomics DS Fischer, L Dony, M König, A Moeed, L Zappia, L Heumos, S Tritschler, ... Genome Biology 22 (1), 1-21, 2021 | 27 | 2021 |
Asc-1 regulates white versus beige adipocyte fate in a subcutaneous stromal cell population L Suwandhi, I Altun, R Karlina, V Miok, T Wiedemann, D Fischer, ... Nature Communications 12 (1), 1588, 2021 | 23 | 2021 |