Improved detection of helix-turn-helix DNA-binding motifs in protein sequences IB Dodd, JB Egan Nucleic acids research 18 (17), 5019-5026, 1990 | 627 | 1990 |
Theoretical analysis of epigenetic cell memory by nucleosome modification IB Dodd, MA Micheelsen, K Sneppen, G Thon Cell 129 (4), 813-822, 2007 | 476 | 2007 |
One-step cloning and chromosomal integration of DNA F St-Pierre, L Cui, DG Priest, D Endy, IB Dodd, KE Shearwin ACS synthetic biology 2 (9), 537-541, 2013 | 246 | 2013 |
Systematic method for the detection of potential λ Cro-like DNA-binding regions in proteins IB Dodd, JB Egan Journal of molecular biology 194 (3), 557-564, 1987 | 229 | 1987 |
Cooperativity in long-range gene regulation by the λ CI repressor IB Dodd, KE Shearwin, AJ Perkins, T Burr, A Hochschild, JB Egan Genes & development 18 (3), 344-354, 2004 | 215 | 2004 |
Octamerization of λ CI repressor is needed for effective repression of P RM and efficient switching from lysogeny IB Dodd, AJ Perkins, D Tsemitsidis, JB Egan Genes & development 15 (22), 3013-3022, 2001 | 215 | 2001 |
DNA methylation in human epigenomes depends on local topology of CpG sites C Lövkvist, IB Dodd, K Sneppen, JO Haerter Nucleic acids research 44 (11), 5123-5132, 2016 | 196 | 2016 |
Revisited gene regulation in bacteriophage λ IB Dodd, KE Shearwin, JB Egan Current opinion in genetics & development 15 (2), 145-152, 2005 | 190 | 2005 |
A mathematical model for transcriptional interference by RNA polymerase traffic in Escherichia coli K Sneppen, IB Dodd, KE Shearwin, AC Palmer, RA Schubert, BP Callen, ... Journal of molecular biology 346 (2), 399-409, 2005 | 132 | 2005 |
Cro’s role in the CI–Cro bistable switch is critical for λ’s transition from lysogeny to lytic development RA Schubert, IB Dodd, JB Egan, KE Shearwin Genes & development 21 (19), 2461-2472, 2007 | 113 | 2007 |
Potent transcriptional interference by pausing of RNA polymerases over a downstream promoter AC Palmer, A Ahlgren-Berg, JB Egan, IB Dodd, KE Shearwin Molecular cell 34 (5), 545-555, 2009 | 103 | 2009 |
Collaboration between CpG sites is needed for stable somatic inheritance of DNA methylation states JO Haerter, C Lövkvist, IB Dodd, K Sneppen Nucleic acids research 42 (4), 2235-2244, 2014 | 83 | 2014 |
Ultrasensitive gene regulation by positive feedback loops in nucleosome modification K Sneppen, MA Micheelsen, IB Dodd Molecular systems biology 4 (1), 182, 2008 | 80 | 2008 |
Programmable DNA looping using engineered bivalent dCas9 complexes N Hao, KE Shearwin, IB Dodd Nature Communications 8 (1), 1628, 2017 | 71 | 2017 |
A simple histone code opens many paths to epigenetics K Sneppen, IB Dodd Public Library of Science 8 (8), e1002643, 2012 | 62 | 2012 |
Theory for the stability and regulation of epigenetic landscapes MA Micheelsen, N Mitarai, K Sneppen, IB Dodd Physical biology 7 (2), 026010, 2010 | 61 | 2010 |
The generation of promoter-mediated transcriptional noise in bacteria N Mitarai, IB Dodd, MT Crooks, K Sneppen PLoS computational biology 4 (7), e1000109, 2008 | 60 | 2008 |
Barriers and silencers: a theoretical toolkit for control and containment of nucleosome-based epigenetic states IB Dodd, K Sneppen Journal of molecular biology 414 (4), 624-637, 2011 | 57 | 2011 |
Identification of residues in the N-terminal PAS domains important for dimerization of Arnt and AhR N Hao, ML Whitelaw, KE Shearwin, IB Dodd, A Chapman-Smith Nucleic acids research 39 (9), 3695-3709, 2011 | 57 | 2011 |
Control of gene expression in the P2-related template coliphages: III. DNA sequence of the major control region of phage 186 B Kalionis, IB Dodd, JB Egan Journal of molecular biology 191 (2), 199-209, 1986 | 57 | 1986 |