CRISPRCasFinder, an update of CRISRFinder, includes a portable version, enhanced performance and integrates search for Cas proteins D Couvin, A Bernheim, C Toffano-Nioche, M Touchon, J Michalik, ... Nucleic acids research 46 (W1), W246-W251, 2018 | 1024 | 2018 |
The pan-immune system of bacteria: antiviral defence as a community resource A Bernheim, R Sorek Nature reviews microbiology 18 (2), 113-119, 2020 | 457 | 2020 |
Genetic and life-history traits associated with the distribution of prophages in bacteria M Touchon, A Bernheim, EPC Rocha The ISME journal 10 (11), 2744-2754, 2016 | 325 | 2016 |
Systematic and quantitative view of the antiviral arsenal of prokaryotes F Tesson, A Hervé, E Mordret, M Touchon, C D’humières, J Cury, ... Nature communications 13 (1), 2561, 2022 | 279 | 2022 |
Bacterial retrons function in anti-phage defense A Millman, A Bernheim, A Stokar-Avihail, T Fedorenko, M Voichek, ... Cell 183 (6), 1551-1561. e12, 2020 | 260 | 2020 |
Prokaryotic viperins produce diverse antiviral molecules A Bernheim, A Millman, G Ofir, G Meitav, C Avraham, H Shomar, ... Nature 589 (7840), 120-124, 2021 | 196 | 2021 |
An expanded arsenal of immune systems that protect bacteria from phages A Millman, S Melamed, A Leavitt, S Doron, A Bernheim, J Hör, J Garb, ... Cell host & microbe 30 (11), 1556-1569. e5, 2022 | 191 | 2022 |
Phages and their satellites encode hotspots of antiviral systems F Rousset, F Depardieu, S Miele, J Dowding, AL Laval, E Lieberman, ... Cell host & microbe 30 (5), 740-753. e5, 2022 | 164 | 2022 |
Multiple phage resistance systems inhibit infection via SIR2-dependent NAD+ depletion J Garb, A Lopatina, A Bernheim, M Zaremba, V Siksnys, S Melamed, ... Nature microbiology 7 (11), 1849-1856, 2022 | 96 | 2022 |
A eukaryotic-like serine/threonine kinase protects staphylococci against phages F Depardieu, JP Didier, A Bernheim, A Sherlock, H Molina, B Duclos, ... Cell host & microbe 20 (4), 471-481, 2016 | 95 | 2016 |
The highly diverse antiphage defence systems of bacteria H Georjon, A Bernheim Nature Reviews Microbiology 21 (10), 686-700, 2023 | 92 | 2023 |
Inhibition of NHEJ repair by type II-A CRISPR-Cas systems in bacteria A Bernheim, A Calvo-Villamañán, C Basier, L Cui, EPC Rocha, ... Nature communications 8 (1), 2094, 2017 | 92 | 2017 |
Atypical organizations and epistatic interactions of CRISPRs and cas clusters in genomes and their mobile genetic elements A Bernheim, D Bikard, M Touchon, EPC Rocha Nucleic acids research 48 (2), 748-760, 2020 | 49 | 2020 |
Evolutionary and mechanistic diversity of Type IF CRISPR-associated transposons SE Klompe, N Jaber, LY Beh, JT Mohabir, A Bernheim, SH Sternberg Molecular cell 82 (3), 616-628. e5, 2022 | 46 | 2022 |
Genetic exchanges are more frequent in bacteria encoding capsules O Rendueles, JAM de Sousa, A Bernheim, M Touchon, EPC Rocha PLoS genetics 14 (12), e1007862, 2018 | 43 | 2018 |
Silencing of Antibiotic Resistance in E. coli with Engineered Phage Bearing Small Regulatory RNAs VK Libis, AG Bernheim, C Basier, S Jaramillo-Riveri, M Deyell, ... ACS synthetic biology 3 (12), 1003-1006, 2014 | 36 | 2014 |
A matter of background: DNA repair pathways as a possible cause for the sparse distribution of CRISPR-Cas systems in bacteria A Bernheim, D Bikard, M Touchon, EPC Rocha Philosophical Transactions of the Royal Society B 374 (1772), 20180088, 2019 | 35 | 2019 |
Synergy and regulation of antiphage systems: toward the existence of a bacterial immune system? F Tesson, A Bernheim Current Opinion in Microbiology 71, 102238, 2023 | 25 | 2023 |
Conservation of antiviral systems across domains of life reveals novel immune mechanisms in humans J Cury, E Mordret, VH Trejo, F Tesson, G Ofir, EZ Poirier, A Bernheim bioRxiv, 2022.12. 12.520048, 2022 | 16 | 2022 |
Engineering gene overlaps to sustain genetic constructs in vivo AL Decrulle, A Frénoy, TA Meiller-Legrand, A Bernheim, C Lotton, ... PLoS computational biology 17 (10), e1009475, 2021 | 11 | 2021 |