Knotted proteins: A tangled tale of structural biology PFN Faísca Computational and structural biotechnology journal 13, 459-468, 2015 | 85 | 2015 |
The folding of knotted proteins: insights from lattice simulations PFN Faisca, RDM Travasso, T Charters, A Nunes, M Cieplak Physical biology 7 (1), 016009, 2010 | 54 | 2010 |
Effects of knots on protein folding properties MA Soler, PFN Faísca PLoS ONE 8 (9), e74755, 2013 | 48 | 2013 |
Non‐native interactions play an effective role in protein folding dynamics PFN Faisca, A Nunes, RDM Travasso, EI Shakhnovich Protein Science 19 (11), 2196-2209, 2010 | 47 | 2010 |
Identification of a conserved aggregation-prone intermediate state in the folding pathways of Spc-SH3 amyloidogenic variants H Krobath, SG Estácio, PFN Faísca, EI Shakhnovich Journal of Molecular Biology 422, 705:722, 2012 | 45 | 2012 |
Effects of knot type in the folding of topologically complex lattice proteins MA Soler, A Nunes, PFN Faisca The Journal of Chemical Physics 141, 025101, 2014 | 42 | 2014 |
A Simulated Intermediate State for Folding and Aggregation Provides Insights into ΔN6 β2-Microglobulin Amyloidogenic Behavior SG Estácio, H Krobath, D Vila-Viçosa, M Machuqueiro, EI Shakhnovich, ... PLoS computational biology 10 (5), e1003606, 2014 | 37 | 2014 |
The nucleation mechanism of protein folding: a survey of computer simulation studies PFN Faisca Journal of Physics: Condensed Matter 21 (37), 373102, 2009 | 34 | 2009 |
Cooperativity and the origins of rapid, single‐exponential kinetics in protein folding PFN Faísca, KW Plaxco Protein science 15 (7), 1608-1618, 2006 | 34 | 2006 |
Steric confinement and enhanced local flexibility assist knotting in simple models of protein folding MA Soler, A Rey, PFN Faísca Physical Chemistry Chemical Physics 18 (38), 26391-26403, 2016 | 33 | 2016 |
Thermodynamic control and dynamical regimes in protein folding PFN Faisca, RC Ball The Journal of chemical physics 116 (16), 7231-7237, 2002 | 31 | 2002 |
Robustness of atomistic Go models in predicting native-like folding intermediates SG Estácio, CS Fernandes, H Krobath, PFN Faisca, EI Shakhnovich J. Chem. Phys. 137, 085102, 2012 | 29 | 2012 |
Structural and energetic determinants of co-translational folding K Krobath, EI Shakhnovich, PFN Faisca The Journal of Chemical Physics 138 (22), 215101, 2013 | 27 | 2013 |
Protein folding: An introduction CM Gomes, PFN Faísca, CM Gomes, PFN Faísca Protein Folding: An Introduction, 1-63, 2019 | 26 | 2019 |
Topological complexity, contact order, and protein folding rates PFN Faisca, RC Ball The Journal of chemical physics 117 (18), 8587-8591, 2002 | 23 | 2002 |
Why Do Protein Folding Rates Correlate with Metrics of Native Topology? PFN Faísca, RDM Travasso, A Parisi, A Rey PLoS ONE 7 (4), e35599, 2012 | 22 | 2012 |
Identifying critical residues in protein folding: Insights from ϕ-value and Pfold analysis PFN Faisca, RDM Travasso, RC Ball, EI Shakhnovich The Journal of chemical physics 129 (9), 2008 | 21 | 2008 |
Calcium binding to gatekeeper residues flanking aggregation-prone segments underlies non-fibrillar amyloid traits in superoxide dismutase 1 (SOD1) SG Estácio, SS Leal, JS Cristóvão, PFN Faísca, CM Gomes Biochimica et Biophysica Acta (BBA)-Proteins and Proteomics 1854 (2), 118-126, 2015 | 20 | 2015 |
How Difficult Is It to Fold a Knotted Protein? In Silico Insights from Surface-Tethered Folding Experiments MA Soler, PFN Faísca PLoS One 7 (e52343), 2012 | 20 | 2012 |
Folding and form: Insights from lattice simulations PFN Faisca, MM Telo da Gama, RC Ball Physical Review E—Statistical, Nonlinear, and Soft Matter Physics 69 (5 …, 2004 | 20 | 2004 |