| clusterProfiler 4.0: A universal enrichment tool for interpreting omics data T Wu, E Hu, S Xu, M Chen, P Guo, Z Dai, T Feng, L Zhou, W Tang, LI Zhan, ... The innovation 2 (3), 2021 | 5767 | 2021 |
| Treeio: An R Package for Phylogenetic Tree Input and Output with Richly Annotated and Associated Data LG Wang, TTY Lam, S Xu, Z Dai, L Zhou, T Feng, P Guo, CW Dunn, ... Molecular biology and evolution 37 (2), 599-603, 2020 | 383 | 2020 |
| Gut microbiota and metabolite alterations associated with reduced bone mineral density or bone metabolic indexes in postmenopausal osteoporosis J He, S Xu, B Zhang, C Xiao, Z Chen, F Si, J Fu, X Lin, G Zheng, G Yu, ... Aging (Albany NY) 12 (9), 8583, 2020 | 174 | 2020 |
| Use ggbreak to effectively utilize plotting space to deal with large datasets and outliers S Xu, M Chen, T Feng, L Zhan, L Zhou, G Yu Frontiers in Genetics 12, 774846, 2021 | 158 | 2021 |
| ggtreeExtra: compact visualization of richly annotated phylogenetic data S Xu, Z Dai, P Guo, X Fu, S Liu, L Zhou, W Tang, T Feng, M Chen, L Zhan, ... Molecular biology and evolution 38 (9), 4039-4042, 2021 | 158 | 2021 |
| Exploring epigenomic datasets by ChIPseeker Q Wang, M Li, T Wu, L Zhan, L Li, M Chen, W Xie, Z Xie, E Hu, S Xu, G Yu Current protocols 2 (10), e585, 2022 | 103 | 2022 |
| Ggtree: A serialized data object for visualization of a phylogenetic tree and annotation data S Xu, L Li, X Luo, M Chen, W Tang, L Zhan, Z Dai, TT Lam, Y Guan, G Yu IMeta 1 (4), e56, 2022 | 74 | 2022 |
| Featured gut microbiomes associated with the progression of chronic hepatitis B disease Z Chen, Y Xie, F Zhou, B Zhang, J Wu, L Yang, S Xu, R Stedtfeld, Q Chen, ... Frontiers in microbiology 11, 383, 2020 | 69 | 2020 |
| ggmsa: a visual exploration tool for multiple sequence alignment and associated data L Zhou, T Feng, S Xu, F Gao, TT Lam, Q Wang, T Wu, H Huang, L Zhan, ... Briefings in Bioinformatics 23 (4), bbac222, 2022 | 64 | 2022 |
| MicrobiotaProcess: A comprehensive R package for deep mining microbiome S Xu, L Zhan, W Tang, Q Wang, Z Dai, L Zhou, T Feng, M Chen, T Wu, ... The Innovation 4 (2), 2023 | 62 | 2023 |
| Identification of a male-specific DNA marker in the large yellow croaker (Larimichthys crocea) A Lin, S Xiao, S Xu, K Ye, X Lin, S Sun, Z Wang Aquaculture 480, 116-122, 2017 | 55 | 2017 |
| Transcriptome-wide identification and functional investigation of circular RNA in the teleost large yellow croaker (Larimichthys crocea) S Xu, S Xiao, C Qiu, Z Wang Marine Genomics 32, 71-78, 2017 | 30 | 2017 |
| Rapid construction of genome map for large yellow croaker (Larimichthys crocea) by the whole-genome mapping in BioNano Genomics Irys system S Xiao, J Li, F Ma, L Fang, S Xu, W Chen, ZY Wang BMC genomics 16, 1-10, 2015 | 25 | 2015 |
| MicrobiotaProcess: A comprehensive R package for managing and analyzing microbiome and other ecological data within the tidy framework S Xu, Z Li, W Tang, Z Dai, L Zhou, T Feng, M Chen, S Liu, X Fu, T Wu, ... | 22 | 2022 |
| Preservation of the fecal samples at ambient temperature for microbiota analysis with a cost-effective and reliable stabilizer EffcGut L Yang, K Hou, B Zhang, C Ouyang, A Lin, S Xu, D Ke, L Fang, Q Chen, ... Science of the Total Environment 741, 140423, 2020 | 19 | 2020 |
| Leveraging fecal bacterial survey data to predict colorectal tumors B Zhang, S Xu, W Xu, Q Chen, Z Chen, C Yan, Y Fan, H Zhang, Q Liu, ... Frontiers in genetics 10, 447, 2019 | 16 | 2019 |
| Genome-wide association study using single marker analysis and Bayesian methods for the gonadosomatic index in the large yellow croaker Y Gao, L Dong, S Xu, S Xiao, M Fang, Z Wang Aquaculture 486, 26-30, 2018 | 12 | 2018 |
| Genetic parameter estimation of nine quantitative traits by a marker‐based method in Large Yellow Croaker, Larimichthys crocea (Richardson) C Qiu, L Dong, S Xiao, S Xu, M Fang, Z Wang Aquaculture research 48 (12), 5892-5900, 2017 | 11 | 2017 |
| Characterization of toxin-antitoxin systems from public sequencing data: A case study in Pseudomonas aeruginosa Z Dai, T Wu, S Xu, L Zhou, W Tang, E Hu, L Zhan, M Chen, G Yu Frontiers in Microbiology 13, 951774, 2022 | 3 | 2022 |
| Cloning and expression profiling of gsdf and amh genes in large yellow croaker (Larimichthys crocea) LIN Aiqiang, XIE Yangjie, XU Shuangbin, YE Kun, G Shiqi, W Zhiyong South China Fisheries Science 13 (6), 1-13, 2017 | 2 | 2017 |
