Sequencing of the smallest Apicomplexan genome from the human pathogen Babesia microti E Cornillot, K Hadj-Kaddour, A Dassouli, B Noel, V Ranwez, B Vacherie, ... Nucleic acids research 40 (18), 9102-9114, 2012 | 216 | 2012 |
An efficient algorithm for gene/species trees parsimonious reconciliation with losses, duplications and transfers JP Doyon, C Scornavacca, KY Gorbunov, GJ Szöllősi, V Ranwez, V Berry Comparative Genomics: International Workshop, RECOMB-CG 2010, Ottawa, Canada …, 2010 | 192 | 2010 |
Models, algorithms and programs for phylogeny reconciliation JP Doyon, V Ranwez, V Daubin, V Berry Briefings in bioinformatics 12 (5), 392-400, 2011 | 184 | 2011 |
On the interpretation of bootstrap trees: appropriate threshold of clade selection and induced gain V Berry, O Gascuel Molecular Biology and Evolution 13 (7), 999-1011, 1996 | 171 | 1996 |
Multiple nuclear genes stabilize the phylogenetic backbone of the genus Quercus F Hubert, GW Grimm, E Jousselin, V Berry, A Franc, A Kremer Systematics and Biodiversity 12 (4), 405-423, 2014 | 142 | 2014 |
One fig to bind them all: host conservatism in a fig wasp community unraveled by cospeciation analyses among pollinating and nonpollinating fig wasps E Jousselin, S Van Noort, V Berry, JY Rasplus, N Rønsted, JC Erasmus, ... Evolution 62 (7), 1777-1797, 2008 | 111 | 2008 |
Inferring evolutionary trees with strong combinatorial evidence V Berry, O Gascuel Theoretical computer science 240 (2), 271-298, 2000 | 106 | 2000 |
SDM: a fast distance-based approach for (super) tree building in phylogenomics A Criscuolo, V Berry, EJP Douzery, O Gascuel Systematic Biology 55 (5), 740-755, 2006 | 101 | 2006 |
Quartet cleaning: improved algorithms and simulations V Berry, T Jiang, P Kearney, M Li, T Wareham Algorithms-ESA’99: 7th Annual European Symposium Prague, Czech Republic …, 1999 | 93 | 1999 |
Computing galled networks from real data DH Huson, R Rupp, V Berry, P Gambette, C Paul Bioinformatics 25 (12), i85-i93, 2009 | 86 | 2009 |
A practical algorithm for recovering the best supported edges of an evolutionary tree V Berry, D Bryant, T Jiang, PE Kearney, M Li, T Wareham, H Zhang SODA, 287-296, 2000 | 74 | 2000 |
Genetic structure and evolution of the Leishmania genus in Africa and Eurasia: what does MLSA tell us F El Baidouri, L Diancourt, V Berry, F Chevenet, F Pratlong, P Marty, ... PLoS neglected tropical diseases 7 (6), e2255, 2013 | 71 | 2013 |
PhySIC_IST: cleaning source trees to infer more informative supertrees C Scornavacca, V Berry, V Lefort, EJP Douzery, V Ranwez BMC bioinformatics 9 (413), 1-17, 2008 | 58 | 2008 |
Inferring evolutionary trees with strong combinatorial evidence V Berry, O Gascuel International Computing and Combinatorics Conference, 111-123, 1997 | 55 | 1997 |
A structured family of clustering and tree construction methods D Bryant, V Berry Advances in Applied Mathematics 27 (4), 705-732, 2001 | 54 | 2001 |
PhySIC: a veto supertree method with desirable properties V Ranwez, V Berry, A Criscuolo, PH Fabre, S Guillemot, C Scornavacca, ... Systematic Biology 56 (5), 798-817, 2007 | 52 | 2007 |
Three New Genome Assemblies Support a Rapid Radiation in Musa acuminata (Wild Banana) M Rouard, G Droc, G Martin, J Sardos, Y Hueber, V Guignon, A Cenci, ... Genome biology and evolution 10 (12), 3129-3140, 2018 | 51 | 2018 |
Representing a set of reconciliations in a compact way C Scornavacca, W Paprotny, V Berry, V Ranwez Journal of bioinformatics and computational biology 11 (02), 1250025, 2013 | 49 | 2013 |
Quartets and unrooted phylogenetic networks P Gambette, V Berry, C Paul Journal of bioinformatics and computational biology 10 (04), 1250004, 2012 | 44 | 2012 |
Faster reliable phylogenetic analysis V Berry, D Bryant Proceedings of the third annual international conference on Computational …, 1999 | 43 | 1999 |