Design of a peptide-based subunit vaccine against novel coronavirus SARS-CoV-2 P Kalita, AK Padhi, KYJ Zhang, T Tripathi Microbial Pathogenesis 145, 104236, 2020 | 216 | 2020 |
High-throughput rational design of the remdesivir binding site in the RdRp of SARS-CoV-2: implications for potential resistance AK Padhi, R Shukla, P Saudagar, T Tripathi Iscience 24 (1), 2021 | 76* | 2021 |
Unraveling the mechanism of arbidol binding and inhibition of SARS-CoV-2: Insights from atomistic simulations AK Padhi, A Seal, JM Khan, M Ahamed, T Tripathi European journal of pharmacology 894, 173836, 2021 | 74* | 2021 |
Development of multi-epitope driven subunit vaccine against Fasciola gigantica using immunoinformatics approach P Kalita, DL Lyngdoh, AK Padhi, H Shukla, T Tripathi International journal of biological macromolecules 138, 224-233, 2019 | 69 | 2019 |
Can SARS-CoV-2 accumulate mutations in the S-protein to increase pathogenicity? AK Padhi, T Tripathi ACS Pharmacology & Translational Science 3 (5), 1023-1026, 2020 | 64 | 2020 |
Mechanisms of loss of functions of human angiogenin variants implicated in amyotrophic lateral sclerosis AK Padhi, H Kumar, SV Vasaikar, B Jayaram, J Gomes PLoS One 7 (2), e32479, 2012 | 63 | 2012 |
Accelerating COVID-19 research using molecular dynamics simulation AK Padhi, SL Rath, T Tripathi The Journal of Physical Chemistry B 125 (32), 9078-9091, 2021 | 60 | 2021 |
Prediction of functional loss of human angiogenin mutants associated with ALS by molecular dynamics simulations AK Padhi, B Jayaram, J Gomes Scientific reports 3 (1), 1225, 2013 | 56 | 2013 |
Scanning the RBD-ACE2 molecular interactions in Omicron variant SL Rath, AK Padhi, M Nabanita Biochemical and Biophysical Research Communications 592, 18-23, 2022 | 55 | 2022 |
A variant in human AIOLOS impairs adaptive immunity by interfering with IKAROS M Yamashita, HS Kuehn, K Okuyama, S Okada, Y Inoue, N Mitsuiki, ... Nature immunology 22 (7), 893-903, 2021 | 42 | 2021 |
The VP4 peptide of hepatitis A virus ruptures membranes through formation of discrete pores A Shukla, AK Padhi, J Gomes, M Banerjee Journal of virology 88 (21), 12409-12421, 2014 | 42 | 2014 |
NeuroDNet-an open source platform for constructing and analyzing neurodegenerative disease networks SV Vasaikar, AK Padhi, B Jayaram, J Gomes BMC neuroscience 14, 1-13, 2013 | 35 | 2013 |
Interface‐based design of the favipiravir‐binding site in SARS‐CoV‐2 RNA‐dependent RNA polymerase reveals mutations conferring resistance to chain termination AK Padhi, J Dandapat, P Saudagar, VN Uversky, T Tripathi FEBS letters 595 (18), 2366-2382, 2021 | 29 | 2021 |
Hotspot residues and resistance mutations in the nirmatrelvir-binding site of SARS-CoV-2 main protease: Design, identification, and correlation with globally circulating viral … AK Padhi, T Tripathi Biochemical and Biophysical Research Communications 629, 54-60, 2022 | 27 | 2022 |
Targeted design of drug binding sites in the main protease of SARS-CoV-2 reveals potential signatures of adaptation AK Padhi, T Tripathi Biochemical and biophysical research communications 555, 147-153, 2021 | 27 | 2021 |
Molecular insights into the differential dynamics of SARS-CoV-2 variants of concern N Mandal, AK Padhi, SL Rath Journal of Molecular Graphics and Modelling 114, 108194, 2022 | 26 | 2022 |
Identification and characterization of novel and rare susceptible variants in Indian amyotrophic lateral sclerosis patients P Narain, AK Padhi, U Dave, D Mishra, R Bhatia, P Vivekanandan, ... Neurogenetics 20 (4), 197-208, 2019 | 22 | 2019 |
Seven amino acid types suffice to create the core fold of RNA polymerase S Yagi, AK Padhi, J Vucinic, S Barbe, T Schiex, R Nakagawa, D Simoncini, ... Journal of the American Chemical Society 143 (39), 15998-16006, 2021 | 20 | 2021 |
Computational and functional characterization of angiogenin mutations, and correlation with amyotrophic lateral sclerosis AK Padhi, K Banerjee, J Gomes, M Banerjee PLoS One 9 (11), e111963, 2014 | 17 | 2014 |
Fast prediction of deleterious angiogenin mutations causing amyotrophic lateral sclerosis AK Padhi, SV Vasaikar, B Jayaram, J Gomes FEBS letters 587 (12), 1762-1766, 2013 | 16 | 2013 |