关注
Ka Ming Nip
Ka Ming Nip
PhD, Bioinformatics, University of British Columbia
在 bcgsc.ca 的电子邮件经过验证
标题
引用次数
引用次数
年份
Comprehensive molecular characterization of gastric adenocarcinoma.
TCGA
Nature 513 (7517), 202–209, 2014
52302014
Comprehensive genomic characterization of squamous cell lung cancers.
TCGA
Nature 489 (7423), 519–525, 2012
36892012
Subgroup-specific structural variation across 1,000 medulloblastoma genomes
PA Northcott, DJH Shih, J Peacock, L Garzia, A Sorana Morrissy, ...
Nature 488 (7409), 49-56, 2012
9702012
Reduced adenosine-to-inosine miR-455-5p editing promotes melanoma growth and metastasis
E Shoshan, AK Mobley, RR Braeuer, T Kamiya, L Huang, ME Vasquez, ...
Nature Cell Biology 17 (3), 311, 2015
2382015
BioBloom tools: fast, accurate and memory-efficient host species sequence screening using bloom filters
J Chu, S Sadeghi, A Raymond, SD Jackman, KM Nip, R Mar, ...
Bioinformatics 30 (23), 3402-3404, 2014
1182014
Complete genomic landscape of a recurring sporadic parathyroid carcinoma
K Kasaian, SM Wiseman, N Thiessen, KL Mungall, RD Corbett, JQ Qian, ...
The Journal of Pathology 230 (3), 249-260, 2013
742013
A clinical transcriptome approach to patient stratification and therapy selection in acute myeloid leukemia
TR Docking, JDK Parker, M Jädersten, G Duns, L Chang, J Jiang, ...
Nature Communications 12 (1), 2474, 2021
722021
RNA-Bloom enables reference-free and reference-guided sequence assembly for single-cell transcriptomes
KM Nip, R Chiu, C Yang, J Chu, H Mohamadi, RL Warren, I Birol
Genome research 30 (8), 1191-1200, 2020
52*2020
Combining accurate tumor genome simulation with crowdsourcing to benchmark somatic structural variant detection
AY Lee, AD Ewing, K Ellrott, Y Hu, KE Houlahan, JC Bare, SMG Espiritu, ...
Genome Biology 19 (1), 188, 2018
482018
Systematic assessment of long-read RNA-seq methods for transcript identification and quantification
FJ Pardo-Palacios, D Wang, F Reese, M Diekhans, S Carbonell-Sala, ...
Nature methods, 1-15, 2024
372024
Recurrent tumor-specific regulation of alternative polyadenylation of cancer-related genes
Z Xue, RL Warren, EA Gibb, D MacMillan, J Wong, R Chiu, SA Hammond, ...
BMC Genomics 19 (1), 536, 2018
302018
Kleat: cleavage site analysis of transcriptomes
I Birol, A Raymond, R Chiu, KM Nip, SD Jackman, M Kreitzman, ...
Pacific Symposium on Biocomputing 2015, 347-358, 2014
282014
Spruce giga‐genomes: structurally similar yet distinctive with differentially expanding gene families and rapidly evolving genes
KK Gagalova, RL Warren, L Coombe, J Wong, KM Nip, MMS Yuen, ...
The Plant Journal 111 (5), 1469-1485, 2022
212022
Trans-NanoSim characterizes and simulates nanopore RNA-sequencing data
S Hafezqorani, C Yang, T Lo, KM Nip, RL Warren, I Birol
Gigascience 9 (6), giaa061, 2020
192020
Barnacle: detecting and characterizing tandem duplications and fusions in transcriptome assemblies
L Swanson, G Robertson, KL Mungall, YS Butterfield, R Chiu, RD Corbett, ...
BMC Genomics 14 (1), 550, 2013
182013
TAP: A targeted clinical genomics pipeline for detecting transcript variants using RNA-seq data
R Chiu, KM Nip, J Chu, I Birol
BMC Medical Genomics 11 (1), 79, 2018
162018
Mining amphibian and insect transcriptomes for antimicrobial peptide sequences with rAMPage
D Lin, D Sutherland, SI Aninta, N Louie, KM Nip, C Li, A Yanai, L Coombe, ...
Antibiotics 11 (7), 952, 2022
142022
Reference-free assembly of long-read transcriptome sequencing data with RNA-Bloom2
KM Nip, S Hafezqorani, KK Gagalova, R Chiu, C Yang, RL Warren, I Birol
Nature Communications 14 (1), 2940, 2023
132023
Linear time complexity de novo long read genome assembly with GoldRush
J Wong, L Coombe, V Nikolić, E Zhang, KM Nip, P Sidhu, RL Warren, ...
Nature Communications 14 (1), 2906, 2023
122023
Fusion-Bloom: fusion detection in assembled transcriptomes
R Chiu, KM Nip, I Birol
Bioinformatics 36 (7), 2256-2257, 2020
112020
系统目前无法执行此操作,请稍后再试。
文章 1–20