The Synthetic Biology Open Language (SBOL) provides a community standard for communicating designs in synthetic biology M Galdzicki, KP Clancy, E Oberortner, M Pocock, JY Quinn, CA Rodriguez, ... Nature biotechnology 32 (6), 545-550, 2014 | 327 | 2014 |
Sharing structure and function in biological design with SBOL 2.0 N Roehner, J Beal, K Clancy, B Bartley, G Misirli, R Grunberg, ... ACS synthetic biology 5 (6), 498-506, 2016 | 98 | 2016 |
Design automation in synthetic biology E Appleton, C Madsen, N Roehner, D Densmore Cold Spring Harbor perspectives in biology 9 (4), a023978, 2017 | 90 | 2017 |
iBioSim 3: A Tool for Model-Based Genetic Circuit Design L Watanabe, T Nguyen, M Zhang, Z Zundel, Z Zhang, C Madsen, ... ACS synthetic biology 8 (7), 1560-1563, 2018 | 85 | 2018 |
Synthetic biology open language (SBOL) version 2.0. 0 B Bartley, J Beal, K Clancy, G Misirli, N Roehner, E Oberortner, M Pocock, ... Journal of integrative bioinformatics 12 (2), 902-991, 2015 | 73 | 2015 |
Synthetic biology open language (SBOL) version 2.2. 0 RS Cox III, C Madsen, JA McLaughlin, T Nguyen, N Roehner, B Bartley, ... Journal of integrative bioinformatics 15 (1), 20180001, 2018 | 56 | 2018 |
Registry in a tube: multiplexed pools of retrievable parts for genetic design space exploration LBA Woodruff, TE Gorochowski, N Roehner, TS Mikkelsen, D Densmore, ... Nucleic Acids Research 45 (3), 1553-1565, 2017 | 53 | 2017 |
Design and Test of Genetic Circuits UsingiBioSim C Madsen, CJ Myers, T Patterson, N Roehner, JT Stevens, C Winstead IEEE Design & Test of Computers 29 (3), 32-39, 2012 | 46 | 2012 |
Synthetic biology open language (SBOL) version 1.1. 0 M Galdzicki, M Wilson, CA Rodriguez, MR Pocock, E Oberortner, L Adam, ... | 38 | 2012 |
Needs and opportunities in bio-design automation: four areas for focus E Appleton, D Densmore, C Madsen, N Roehner Current Opinion in Chemical Biology 40, 111-118, 2017 | 36 | 2017 |
Double dutch: a tool for designing combinatorial libraries of biological systems N Roehner, EM Young, CA Voigt, DB Gordon, D Densmore ACS Synthetic Biology 5 (6), 507-517, 2016 | 35 | 2016 |
A methodology to annotate systems biology markup language models with the synthetic biology open language N Roehner, CJ Myers ACS synthetic biology 3 (2), 57-66, 2014 | 35 | 2014 |
Generating systems biology markup language models from the synthetic biology open language N Roehner, Z Zhang, T Nguyen, CJ Myers ACS synthetic biology 4 (8), 873-879, 2015 | 34 | 2015 |
Directed acyclic graph-based technology mapping of genetic circuit models N Roehner, CJ Myers ACS synthetic biology 3 (8), 543-555, 2014 | 34 | 2014 |
libSBOLj 2.0: a java library to support SBOL 2.0 Z Zhang, T Nguyen, N Roehner, G Misirli, M Pocock, E Oberortner, ... IEEE life sciences letters 1 (4), 34-37, 2015 | 33 | 2015 |
Synthetic biology open language (SBOL) version 2.3 C Madsen, A Goñi Moreno, U P, Z Palchick, N Roehner, C Atallah, ... Journal of integrative bioinformatics 16 (2), 20190025, 2019 | 31 | 2019 |
A framework for genetic logic synthesis P Vaidyanathan, BS Der, S Bhatia, N Roehner, R Silva, CA Voigt, ... Proceedings of the IEEE 103 (11), 2196-2207, 2015 | 30 | 2015 |
Utilizing stochastic model checking to analyze genetic circuits C Madsen, CJ Myers, N Roehner, C Winstead, Z Zhang 2012 IEEE Symposium on Computational Intelligence in Bioinformatics and …, 2012 | 28 | 2012 |
Proposed data model for the next version of the Synthetic Biology Open Language N Roehner, E Oberortner, M Pocock, J Beal, K Clancy, C Madsen, ... ACS synthetic biology 4 (1), 57-71, 2015 | 26 | 2015 |
Synthetic biology open language (SBOL) version 2.1. 0 J Beal, RS Cox, R Grünberg, J McLaughlin, T Nguyen, B Bartley, M Bissell, ... Journal of integrative bioinformatics 13 (3), 30-132, 2016 | 25 | 2016 |