Markov state-based quantitative kinetic model of sodium release from the dopamine transporter A Razavi, G Khelashvil, H Weinstein Biophysical Journal 112 (3), 127a, 2017 | 71 | 2017 |
Mechanisms of lipid scrambling by the G protein-coupled receptor opsin G Morra, AM Razavi, K Pandey, H Weinstein, AK Menon, G Khelashvili Structure 26 (2), 356-367. e3, 2018 | 60 | 2018 |
Computational screening and selection of cyclic peptide hairpin mimetics by molecular simulation and kinetic network models AM Razavi, WM Wuest, VA Voelz Journal of chemical information and modeling 54 (5), 1425-1432, 2014 | 55 | 2014 |
Use of paramagnetic 19F NMR to monitor domain movement in a glutamate transporter homolog Y Huang, X Wang, G Lv, AM Razavi, GHM Huysmans, H Weinstein, ... Nature chemical biology 16 (9), 1006-1012, 2020 | 41 | 2020 |
Kinetic network models of tryptophan mutations in β-hairpins reveal the importance of non-native interactions AM Razavi, VA Voelz Journal of Chemical Theory and Computation 11 (6), 2801-2812, 2015 | 38 | 2015 |
Predicting the structural basis of targeted protein degradation by integrating molecular dynamics simulations with structural mass spectrometry T Dixon, D MacPherson, B Mostofian, T Dauzhenka, S Lotz, D McGee, ... Nature communications 13 (1), 5884, 2022 | 37 | 2022 |
How structural elements evolving from bacterial to human SLC6 transporters enabled new functional properties AM Razavi, G Khelashvili, H Weinstein BMC biology 16, 1-14, 2018 | 37 | 2018 |
Reconciling simulated ensembles of apomyoglobin with experimental hydrogen/deuterium exchange data using bayesian inference and multiensemble markov state models H Wan, Y Ge, A Razavi, VA Voelz Journal of chemical theory and computation 16 (2), 1333-1348, 2020 | 29 | 2020 |
Surprisal metrics for quantifying perturbed conformational dynamics in Markov state models VA Voelz, B Elman, AM Razavi, G Zhou Journal of chemical theory and computation 10 (12), 5716-5728, 2014 | 29 | 2014 |
A highly accurate metadynamics-based Dissociation Free Energy method to calculate protein–protein and protein–ligand binding potencies J Wang, A Ishchenko, W Zhang, A Razavi, D Langley Scientific Reports 12 (1), 2024, 2022 | 25 | 2022 |
Thermodynamic coupling function analysis of allosteric mechanisms in the human dopamine transporter MV LeVine, MA Cuendet, AM Razavi, G Khelashvili, H Weinstein Biophysical Journal 114 (1), 10-14, 2018 | 16 | 2018 |
Molecular simulations and free-energy calculations suggest conformation-dependent anion binding to a cytoplasmic site as a mechanism for Na+/K+-ATPase ion selectivity AM Razavi, L Delemotte, JR Berlin, V Carnevale, VA Voelz Journal of Biological Chemistry 292 (30), 12412-12423, 2017 | 16 | 2017 |
Targeted protein degradation: advances, challenges, and prospects for computational methods B Mostofian, HJ Martin, A Razavi, S Patel, B Allen, W Sherman, ... Journal of Chemical Information and Modeling 63 (17), 5408-5432, 2023 | 13 | 2023 |
Atomic-resolution prediction of degrader-mediated ternary complex structures by combining molecular simulations with hydrogen deuterium exchange T Dixon, D MacPherson, B Mostofian, T Dauzhenka, S Lotz, D McGee, ... Biorxiv, 2021.09. 26.461830, 2021 | 12 | 2021 |
A graphic encoding method for quantitative classification of protein structure and representation of conformational changes H Carrillo-Cabada, J Benson, AM Razavi, B Mulligan, MA Cuendet, ... IEEE/ACM transactions on computational biology and bioinformatics 18 (4 …, 2019 | 5 | 2019 |
Graphic encoding of macromolecules for efficient high-throughput analysis T Estrada, J Benson, H Carrillo-Cabada, AM Razavi, MA Cuendet, ... Proceedings of the 2018 ACM International Conference on Bioinformatics …, 2018 | 5 | 2018 |
Cholesterol occupies the lipid translocation pathway to block phospholipid scrambling by a G protein-coupled receptor G Morra, AM Razavi, AK Menon, G Khelashvili Structure 30 (8), 1208-1217. e2, 2022 | 3 | 2022 |
Monitoring Dynamics of Large Membrane Proteins by 19F Paramagnetic Longitudinal Relaxation: Domain Movement in a Glutamate Transporter Homolog Y Huang, X Wang, G Lv, AM Razavi, GHM Huysmans, H Weinstein, ... bioRxiv, 832121, 2019 | 2 | 2019 |
Reconciling simulated ensembles of apomyoglobin with experimental HDX data using Bayesian inference and multi-ensemble Markov State Models H Wan, Y Ge, A Razavi, VA Voelz bioRxiv, 563320, 2019 | 1 | 2019 |
The Role of Direct Effects of Drugs of Abuse Binding to the hDAT Molecule in their Diverse Behavioral Phenotypes S Bergman, A Razavi, G Khelashvili, H Weinstein The FASEB Journal 34 (S1), 1-1, 2020 | | 2020 |