| Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2 E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ... Nature biotechnology 37 (8), 852-857, 2019 | 16333 | 2019 |
| Meta-analysis of gut microbiome studies identifies disease-specific and shared responses C Duvallet, SM Gibbons, T Gurry, RA Irizarry, EJ Alm Nature communications 8 (1), 1784, 2017 | 925 | 2017 |
| SARS-CoV-2 titers in wastewater are higher than expected from clinically confirmed cases F Wu, J Zhang, A Xiao, X Gu, WL Lee, F Armas, K Kauffman, W Hanage, ... Msystems 5 (4), 10.1128/msystems. 00614-20, 2020 | 833 | 2020 |
| A practical guide to methods controlling false discoveries in computational biology K Korthauer, PK Kimes, C Duvallet, A Reyes, A Subramanian, M Teng, ... Genome biology 20, 1-21, 2019 | 315 | 2019 |
| SARS-CoV-2 RNA concentrations in wastewater foreshadow dynamics and clinical presentation of new COVID-19 cases F Wu, A Xiao, J Zhang, K Moniz, N Endo, F Armas, R Bonneau, MA Brown, ... Science of The Total Environment 805, 150121, 2022 | 307 | 2022 |
| Wastewater surveillance of SARS-CoV-2 across 40 US states from February to June 2020 F Wu, A Xiao, J Zhang, K Moniz, N Endo, F Armas, M Bushman, PR Chai, ... Water research 202, 117400, 2021 | 149 | 2021 |
| Correcting for batch effects in case-control microbiome studies SM Gibbons, C Duvallet, EJ Alm PLoS computational biology 14 (4), e1006102, 2018 | 142 | 2018 |
| Making waves: defining the lead time of wastewater-based epidemiology for COVID-19 SW Olesen, M Imakaev, C Duvallet Water Research 202, 117433, 2021 | 104 | 2021 |
| Metrics to relate COVID-19 wastewater data to clinical testing dynamics A Xiao, F Wu, M Bushman, J Zhang, M Imakaev, PR Chai, C Duvallet, ... Water research 212, 118070, 2022 | 103 | 2022 |
| Quantitative SARS-CoV-2 alpha variant B. 1.1. 7 tracking in wastewater by allele-specific RT-qPCR WL Lee, M Imakaev, F Armas, KA McElroy, X Gu, C Duvallet, F Chandra, ... Environmental Science & Technology Letters 8 (8), 675-682, 2021 | 92 | 2021 |
| Standardizing data reporting in the research community to enhance the utility of open data for SARS-CoV-2 wastewater surveillance JS McClary-Gutierrez, ZT Aanderud, M Al-Faliti, C Duvallet, R Gonzalez, ... Environmental science: water research & technology 7 (9), 1545-1551, 2021 | 60 | 2021 |
| Nationwide trends in COVID-19 cases and SARS-CoV-2 RNA wastewater concentrations in the United States C Duvallet, F Wu, KA McElroy, M Imakaev, N Endo, A Xiao, J Zhang, ... ACS Es&t Water 2 (11), 1899-1909, 2022 | 58 | 2022 |
| Framework for rational donor selection in fecal microbiota transplant clinical trials C Duvallet, C Zellmer, P Panchal, S Budree, M Osman, EJ Alm PLoS One 14 (10), e0222881, 2019 | 53 | 2019 |
| Predictability and persistence of prebiotic dietary supplementation in a healthy human cohort T Gurry, SM Gibbons, LTT Nguyen, SM Kearney, A Ananthakrishnan, ... Scientific reports 8 (1), 12699, 2018 | 43 | 2018 |
| dbOTU3: A new implementation of distribution-based OTU calling SW Olesen, C Duvallet, EJ Alm PLoS One 12 (5), e0176335, 2017 | 34 | 2017 |
| Wastewater network infrastructure in public health: applications and learnings from the COVID-19 pandemic N Sharara, N Endo, C Duvallet, N Ghaeli, M Matus, J Heussner, ... PLOS global public health 1 (12), e0000061, 2021 | 33 | 2021 |
| Variant abundance estimation for SARS-CoV-2 in wastewater using RNA-Seq quantification JA Baaijens, A Zulli, IM Ott, ME Petrone, T Alpert, JR Fauver, CC Kalinich, ... medRxiv, 2021 | 32 | 2021 |
| Lineage abundance estimation for SARS-CoV-2 in wastewater using transcriptome quantification techniques JA Baaijens, A Zulli, IM Ott, I Nika, MJ van der Lugt, ME Petrone, T Alpert, ... Genome biology 23 (1), 236, 2022 | 28 | 2022 |
| Peer reviewed: Mapping community opioid exposure through wastewater-based epidemiology as a means to engage pharmacies in harm reduction efforts C Duvallet, BD Hayes, TB Erickson, PR Chai, M Matus Preventing Chronic Disease 17, 2020 | 28 | 2020 |
| Predicting human health from biofluid-based metabolomics using machine learning ED Evans, C Duvallet, ND Chu, MK Oberst, MA Murphy, I Rockafellow, ... Scientific reports 10 (1), 17635, 2020 | 25 | 2020 |
