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| Antigen identification for orphan T cell receptors expressed on tumor-infiltrating lymphocytes MH Gee, A Han, SM Lofgren, JF Beausang, JL Mendoza, ME Birnbaum, ... Cell 172 (3), 549-563. e16, 2018 | 284 | 2018 |
| Interpretation of biological experiments changes with evolution of the Gene Ontology and its annotations A Tomczak, JM Mortensen, R Winnenburg, C Liu, DT Alessi, V Swamy, ... Scientific reports 8 (1), 5115, 2018 | 154 | 2018 |
| Leveraging heterogeneity across multiple datasets increases cell-mixture deconvolution accuracy and reduces biological and technical biases F Vallania, A Tam, S Lofgren, S Schaffert, TD Azad, E Bongen, W Haynes, ... Nature communications 9 (1), 4735, 2018 | 146 | 2018 |
| METTL13 methylation of eEF1A increases translational output to promote tumorigenesis S Liu, S Hausmann, SM Carlson, ME Fuentes, JW Francis, R Pillai, ... Cell 176 (3), 491-504. e21, 2019 | 135 | 2019 |
| Empowering multi-cohort gene expression analysis to increase reproducibility WA Haynes, F Vallania, C Liu, E Bongen, A Tomczak, M Andres-Terrè, ... Pacific symposium on biocomputing 2017, 144-153, 2017 | 133 | 2017 |
| Elevated NSD3 histone methylation activity drives squamous cell lung cancer G Yuan, NM Flores, S Hausmann, SM Lofgren, V Kharchenko, ... Nature 590 (7846), 504-508, 2021 | 91 | 2021 |
| Synthetic promoters capable of driving robust nuclear gene expression in the green alga Chlamydomonas reinhardtii MA Scranton, JT Ostrand, DR Georgianna, SM Lofgren, D Li, RC Ellis, ... Algal research 15, 135-142, 2016 | 91 | 2016 |
| Coordination of stress signals by the lysine methyltransferase SMYD2 promotes pancreatic cancer N Reynoird, PK Mazur, T Stellfeld, NM Flores, SM Lofgren, SM Carlson, ... Genes & development 30 (7), 772-785, 2016 | 84 | 2016 |
| Integrated, multicohort analysis of systemic sclerosis identifies robust transcriptional signature of disease severity S Lofgren, M Hinchcliff, M Carns, T Wood, K Aren, E Arroyo, P Cheung, ... JCI insight 1 (21), 2016 | 72 | 2016 |
| SETD5-coordinated chromatin reprogramming regulates adaptive resistance to targeted pancreatic cancer therapy Z Wang, S Hausmann, R Lyu, TM Li, SM Lofgren, NM Flores, ME Fuentes, ... Cancer cell 37 (6), 834-849. e13, 2020 | 65 | 2020 |
| Gene expression analysis to assess the relevance of rodent models to human lung injury TE Sweeney, S Lofgren, P Khatri, AJ Rogers American journal of respiratory cell and molecular biology 57 (2), 184-192, 2017 | 27 | 2017 |
| Leveraging heterogeneity across multiple data sets increases accuracy of cell-mixture deconvolution and reduces biological and technical biases F Vallania, A Tam, S Lofgren, S Schaffert, TD Azad, E Bongen, M Alsup, ... bioRxiv, 206466, 2017 | 11 | 2017 |
| High-throughput quantitative histology in systemic sclerosis skin disease using computer vision C Correia, S Mawe, S Lofgren, RG Marangoni, J Lee, R Saber, K Aren, ... Arthritis research & therapy 22, 1-11, 2020 | 10 | 2020 |
| Structure-based prediction of transcription factor binding sites J Guo, S Lofgren, A Farrel Tsinghua Science and Technology 19 (6), 568-577, 2014 | 9 | 2014 |
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| Multiplexed transcriptomic profiling of the fate of human CAR T cells in vivo via genetic barcoding with shielded small nucleotides X Lu, SM Lofgren, Y Zhao, PK Mazur Nature Biomedical Engineering 7 (9), 1170-1187, 2023 | 1 | 2023 |
| Author Correction: Combined inhibition of BET family proteins and histone deacetylases as a potential epigenetics-based therapy for pancreatic ductal adenocarcinoma PK Mazur, A Herner, SS Mello, M Wirth, S Hausmann, FJ Sánchez-Rivera, ... Nature medicine, 2024 | | 2024 |
| Inhibition of the MEK5-ERK5 signaling pathway blocks pancreatic tumorigenesis S Hausmann, AE Kasapoglu, AB Morales, S Lofgren, PK Mazur CANCER RESEARCH 82 (22), 35-36, 2022 | | 2022 |
