The future landscape of large language models in medicine J Clusmann, FR Kolbinger, HS Muti, ZI Carrero, JN Eckardt, NG Laleh, ... Communications medicine 3 (1), 141, 2023 | 263 | 2023 |
Transformer-based biomarker prediction from colorectal cancer histology: A large-scale multicentric study SJ Wagner, D Reisenbüchler, NP West, JM Niehues, J Zhu, S Foersch, ... Cancer Cell 41 (9), 1650-1661. e4, 2023 | 68 | 2023 |
Structure-preserving multi-domain stain color augmentation using style-transfer with disentangled representations SJ Wagner, N Khalili, R Sharma, M Boxberg, C Marr, W De Back, T Peng Medical Image Computing and Computer Assisted Intervention–MICCAI 2021: 24th …, 2021 | 49 | 2021 |
Local attention graph-based transformer for multi-target genetic alteration prediction D Reisenbüchler, SJ Wagner, M Boxberg, T Peng International Conference on Medical Image Computing and Computer-Assisted …, 2022 | 20 | 2022 |
Make deep learning algorithms in computational pathology more reproducible and reusable SJ Wagner, C Matek, S Shetab Boushehri, M Boxberg, L Lamm, A Sadafi, ... Nature Medicine 28 (9), 1744-1746, 2022 | 13 | 2022 |
S5cl: unifying fully-supervised, self-supervised, and semi-supervised learning through hierarchical contrastive learning M Tran, SJ Wagner, M Boxberg, T Peng International Conference on Medical Image Computing and Computer-Assisted …, 2022 | 12 | 2022 |
Built to last? Reproducibility and reusability of deep learning algorithms in computational pathology SJ Wagner, C Matek, SS Boushehri, M Boxberg, L Lamm, A Sadafi, ... Modern Pathology 37 (1), 100350, 2024 | 8 | 2024 |
Multi-modality microscopy image style augmentation for nuclei segmentation Y Liu, SJ Wagner, T Peng Journal of Imaging 8 (3), 71, 2022 | 8 | 2022 |
Low-resource finetuning of foundation models beats state-of-the-art in histopathology B Roth, V Koch, SJ Wagner, JA Schnabel, C Marr, T Peng arXiv preprint arXiv:2401.04720, 2024 | 7 | 2024 |
The future landscape of large language models in medicine. Communications Medicine, 3 (1), 141 J Clusmann, FR Kolbinger, HS Muti, ZI Carrero, JN Eckardt, NG Laleh, ... | 6 | 2023 |
Approaching Peak Ground Truth F Kofler, J Wahle, I Ezhov, SJ Wagner, R Al-Maskari, E Gryska, M Todorov, ... arXiv preprint arXiv:2301.00243, 2022 | 5 | 2022 |
From whole-slide image to biomarker prediction: a protocol for end-to-end deep learning in computational pathology OSM El Nahhas, M van Treeck, G Wölflein, M Unger, M Ligero, T Lenz, ... arXiv preprint arXiv:2312.10944, 2023 | 3 | 2023 |
Hest-1k: A dataset for spatial transcriptomics and histology image analysis G Jaume, P Doucet, AH Song, MY Lu, C Almagro-Pérez, SJ Wagner, ... arXiv preprint arXiv:2406.16192, 2024 | 2 | 2024 |
Generating clinical-grade pathology reports from gigapixel whole slide images with HistoGPT M Tran, P Schmidle, SJ Wagner, V Koch, B Novotny, V Lupperger, ... medRxiv, 2024.03. 15.24304211, 2024 | 2 | 2024 |
B-Cos Aligned Transformers Learn Human-Interpretable Features M Tran, A Lahiani, Y Dicente Cid, M Boxberg, P Lienemann, C Matek, ... International Conference on Medical Image Computing and Computer-Assisted …, 2023 | 1 | 2023 |
Using histopathology latent diffusion models as privacy-preserving dataset augmenters improves downstream classification performance JM Niehues, G Müller-Franzes, Y Schirris, SJ Wagner, M Jendrusch, ... Computers in Biology and Medicine 175, 108410, 2024 | | 2024 |
DinoBloom: A Foundation Model for Generalizable Cell Embeddings in Hematology V Koch, SJ Wagner, S Kazeminia, E Sancar, M Hehr, J Schnabel, T Peng, ... arXiv preprint arXiv:2404.05022, 2024 | | 2024 |
Die kommende Entwicklung großer Sprachmodelle in der Medizin. J Clusmann, FR Kolbinger, HS Muti, ZI Carrero, JN Eckardt, NG Laleh, ... Kompass Onkologie 11 (1), 2024 | | 2024 |
ATF6 activation alters colonic lipid metabolism causing tumor-associated microbial adaptation OI Coleman, A Sorbie, S Bierwith, J Kövilein, M von Stern, N Köhler, ... bioRxiv, 2023.11. 03.565267, 2023 | | 2023 |
Reproducibility in the context of AI in health care SJ Wagner, C Matek, SS Boushehri, M Boxberg, L Lamm, A Sadafi, ... Helmholtz Open Science Office, 2023 | | 2023 |