MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity Y Wang, H Tang, JD DeBarry, X Tan, J Li, X Wang, T Lee, H Jin, B Marler, ... Nucleic acids research 40 (7), e49-e49, 2012 | 4531 | 2012 |
The Selaginella genome identifies genetic changes associated with the evolution of vascular plants JA Banks, T Nishiyama, M Hasebe, JL Bowman, M Gribskov, ... science 332 (6032), 960-963, 2011 | 896 | 2011 |
De novo genome sequencing and comparative genomics of date palm (Phoenix dactylifera) EK Al-Dous, B George, ME Al-Mahmoud, MY Al-Jaber, H Wang, ... Nature biotechnology 29 (6), 521-527, 2011 | 464 | 2011 |
VEuPathDB: the eukaryotic pathogen, vector and host bioinformatics resource center B Amos, C Aurrecoechea, M Barba, A Barreto, EY Basenko, R Belnap, ... Nucleic acids research 50 (D1), D898-D911, 2022 | 318 | 2022 |
Theileria parasites secrete a prolyl isomerase to maintain host leukocyte transformation J Marsolier, M Perichon, JD DeBarry, BO Villoutreix, J Chluba, T Lopez, ... Nature 520 (7547), 378-382, 2015 | 126 | 2015 |
Sequence Analysis of Bacterial Artificial Chromosome Clones from the Apospory-Specific Genomic Region of Pennisetum and Cenchrus JA Conner, S Goel, G Gunawan, MM Cordonnier-Pratt, VE Johnson, ... Plant physiology 147 (3), 1396-1411, 2008 | 120 | 2008 |
Applied genomics: data mining reveals species-specific malaria diagnostic targets more sensitive than 18S rRNA A Demas, J Oberstaller, J DeBarry, NW Lucchi, G Srinivasamoorthy, ... Journal of clinical microbiology 49 (7), 2411-2418, 2011 | 103 | 2011 |
Real-time loop-mediated isothermal amplification (RealAmp) for the species-specific identification of Plasmodium vivax JC Patel, J Oberstaller, M Xayavong, J Narayanan, JD DeBarry, ... PloS one 8 (1), e54986, 2013 | 94 | 2013 |
The dynamics of LTR retrotransposon accumulation across 25 million years of panicoid grass evolution MC Estep, JD DeBarry, JL Bennetzen Heredity 110 (2), 194-204, 2013 | 88 | 2013 |
Jumbled genomes: missing Apicomplexan synteny JD DeBarry, JC Kissinger Molecular biology and evolution 28 (10), 2855-2871, 2011 | 85 | 2011 |
A new single-step PCR assay for the detection of the zoonotic malaria parasite Plasmodium knowlesi NW Lucchi, M Poorak, J Oberstaller, J DeBarry, G Srinivasamoorthy, ... PLoS One 7 (2), e31848, 2012 | 75 | 2012 |
The Genome of Haemoproteus tartakovskyi and Its Relationship to Human Malaria Parasites S Bensch, B Canbäck, JD DeBarry, T Johansson, O Hellgren, ... Genome Biology and Evolution 8 (5), 1361-1373, 2016 | 66 | 2016 |
MCScanX: A toolkit for detection and evolutionary analysis of gene synteny and collinearity., 2012, 40, p. e49 Y Wang, H Tang, JD Debarry, X Tan, J Li, X Wang, TH Lee, H Jin, ... DOI: https://doi. org/10.1093/nar/gkr1293, 0 | 57 | |
MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity W Yupeng, T Haibao, JD Debarry, T Xu, L Jingping, W Xiyin, L Tae-Ho, ... Nucleic Acids Res 40 (7), e49, 2012 | 48 | 2012 |
SynView: a GBrowse-compatible approach to visualizing comparative genome data H Wang, JD DeBarry, JC Kissinger A Practical Guide to Bioinformatics Analysis, 99-111, 2010 | 48* | 2010 |
Genome cartography: charting the apicomplexan genome JC Kissinger, J DeBarry Trends in parasitology 27 (8), 345-354, 2011 | 46 | 2011 |
Distinct amino acid and lipid perturbations characterize acute versus chronic malaria RJ Cordy, R Patrapuvich, LN Lili, M Cabrera-Mora, JT Chien, GK Tharp, ... JCI insight 4 (9), 2019 | 45 | 2019 |
PacBio assembly of a Plasmodium knowlesi genome sequence with Hi-C correction and manual annotation of the SICAvar gene family SA Lapp, JA Geraldo, JT Chien, F Ay, SB Pakala, G Batugedara, ... Parasitology 145 (1), 71-84, 2018 | 45 | 2018 |
The Contribution of LTR Retrotransposon Sequences to Gene Evolution in Mus musculus JD DeBarry, EW Ganko, EM McCarthy, JF McDonald Molecular biology and evolution 23 (3), 479-481, 2006 | 38 | 2006 |
Assembly of highly repetitive genomes using short reads: the genome of discrete typing unit III Trypanosoma cruzi strain 231 RP Baptista, JL Reis-Cunha, JD DeBarry, E Chiari, JC Kissinger, ... Microbial genomics 4 (4), e000156, 2018 | 33 | 2018 |