Spaceflight Modifies Escherichia coli Gene Expression in Response to Antibiotic Exposure and Reveals Role of Oxidative Stress Response TR Aunins, KE Erickson, N Prasad, SE Levy, A Jones, S Shrestha, ... Frontiers in microbiology 9, 310, 2018 | 80 | 2018 |
Dissecting RAF inhibitor resistance by structure-based modeling reveals ways to overcome oncogenic RAS signaling OS Rukhlenko, F Khorsand, A Krstic, J Rozanc, LG Alexopoulos, N Rauch, ... Cell systems 7 (2), 161-179. e14, 2018 | 63 | 2018 |
Transcriptome-level signatures in gene expression and gene expression variability during bacterial adaptive evolution KE Erickson, PB Otoupal, A Chatterjee Msphere 2 (1), 10.1128/msphere. 00009-17, 2017 | 36 | 2017 |
Gene expression variability underlies adaptive resistance in phenotypically heterogeneous bacterial populations K Erickson, P Otoupal, A Chatterjee ACS Infectious Diseases, 10.1021/acsinfecdis.5b00095w, 2015 | 32 | 2015 |
CRISPR perturbation of gene expression alters bacterial fitness under stress and reveals underlying epistatic constraints PB Otoupal, KE Erickson, A Escalas-Bordoy, A Chatterjee ACS synthetic biology 6 (1), 94-107, 2017 | 31 | 2017 |
Facile accelerated specific therapeutic (FAST) platform develops antisense therapies to counter multidrug-resistant bacteria KA Eller, TR Aunins, CM Courtney, JK Campos, PB Otoupal, KE Erickson, ... Communications biology 4 (1), 331, 2021 | 24 | 2021 |
Generalizing Gillespie’s direct method to enable network-free simulations R Suderman, ED Mitra, YT Lin, KE Erickson, S Feng, WS Hlavacek Bulletin of mathematical biology 81 (8), 2822-2848, 2019 | 21 | 2019 |
Transcriptome-based design of antisense inhibitors potentiates carbapenem efficacy in CRE Escherichia coli TR Aunins, KE Erickson, A Chatterjee Proceedings of the National Academy of Sciences 117 (48), 30699-30709, 2020 | 20 | 2020 |
New insights into RAS biology reinvigorate interest in mathematical modeling of RAS signaling KE Erickson, OS Rukhlenko, RG Posner, WS Hlavacek, BN Kholodenko Seminars in cancer biology 54, 162-173, 2019 | 19 | 2019 |
The Resistome: A Comprehensive Database of Escherichia coli Resistance Phenotypes JD Winkler, AL Halweg-Edwards, KE Erickson, A Choudhury, G Pines, ... ACS Synthetic Biology 5 (12), 1566-1577, 2016 | 17 | 2016 |
Potentiating antibiotic efficacy via perturbation of non-essential gene expression PB Otoupal, KA Eller, KE Erickson, J Campos, TR Aunins, A Chatterjee Communications Biology 4 (1), 1267, 2021 | 15 | 2021 |
Spaceflight modifies escherichia coli gene expression in response to antibiotic exposure and reveals role of oxidative stress response. Front Microbiol. 2018; 9: 310. Published … TR Aunins, KE Erickson, N Prasad, SE Levy, A Jones, S Shrestha, ... | 15 | 2018 |
The Tolerome: A Database of Transcriptome-Level Contributions to Diverse Escherichia coli Resistance and Tolerance Phenotypes KE Erickson, JD Winkler, DT Nguyen, RT Gill, A Chatterjee ACS Synthetic Biology 6 (12), 2302-2315, 2017 | 15 | 2017 |
Modeling cell line-specific recruitment of signaling proteins to the insulin-like growth factor 1 receptor KE Erickson, OS Rukhlenko, M Shahinuzzaman, KP Slavkova, YT Lin, ... PLoS computational biology 15 (1), e1006706, 2019 | 14 | 2019 |
ROS mediated selection for increased NADPH availability in Escherichia coli TS Reynolds, CM Courtney, KE Erickson, LM Wolfe, A Chatterjee, ... Biotechnology and Bioengineering 114 (11), 2685-2689, 2017 | 14 | 2017 |
Complex systems in metabolic engineering JD Winkler, K Erickson, A Choudhury, AL Halweg-Edwards, RT Gill Current opinion in biotechnology 36, 107-114, 2015 | 12 | 2015 |
Constrictor: constraint modification provides insight into design of biochemical networks KE Erickson, RT Gill, A Chatterjee PloS one 9 (11), e113820, 2014 | 11 | 2014 |
Draft genome sequence for a clinical isolate of vancomycin-resistant Enterococcus faecalis KE Erickson, NE Madinger, A Chatterjee Genome Announcements 4 (3), 10.1128/genomea. 00584-16, 2016 | 6 | 2016 |
Draft genome sequences of clinical isolates of multidrug-resistant Acinetobacter baumannii KE Erickson, NE Madinger, A Chatterjee Genome Announcements 5 (5), 10.1128/genomea. 01547-16, 2017 | 5 | 2017 |
Transcriptome-level signatures in gene expression and gene expression variability during bacterial adaptive evolution. mSphere 2: e00009-17 KE Erickson, PB Otoupal, A Chatterjee | 5 | 2017 |