| DeepDTA: deep drug–target binding affinity prediction H Öztürk, A Özgür, E Ozkirimli Bioinformatics 34 (17), i821-i829, 2018 | 1025 | 2018 |
| Membrane active peptides and their biophysical characterization FG Avci, B Sariyar Akbulut, E Ozkirimli Biomolecules 8 (3), 77, 2018 | 181 | 2018 |
| WideDTA: prediction of drug-target binding affinity H Öztürk, E Ozkirimli, A Özgür arXiv preprint arXiv:1902.04166, 2019 | 178 | 2019 |
| A comparative study of SMILES-based compound similarity functions for drug-target interaction prediction H Öztürk, E Ozkirimli, A Özgür BMC bioinformatics 17, 1-11, 2016 | 131 | 2016 |
| Exploring chemical space using natural language processing methodologies for drug discovery H Öztürk, A Özgür, P Schwaller, T Laino, E Ozkirimli Drug Discovery Today 25 (4), 689-705, 2020 | 123 | 2020 |
| Classification of beta-lactamases and penicillin binding proteins using ligand-centric network models H Öztürk, E Ozkirimli, A Özgür PloS one 10 (2), e0117874, 2015 | 103 | 2015 |
| Src kinase activation: A switched electrostatic network E Ozkirimli, CB Post Protein Science 15 (5), 1051-1062, 2006 | 90 | 2006 |
| An electrostatic network and long‐range regulation of Src kinases E Ozkirimli, SS Yadav, WT Miller, CB Post Protein Science 17 (11), 1871-1880, 2008 | 72 | 2008 |
| Crowdsourced mapping of unexplored target space of kinase inhibitors A Cichońska, B Ravikumar, RJ Allaway, F Wan, S Park, O Isayev, S Li, ... Nature communications 12 (1), 3307, 2021 | 66 | 2021 |
| Comparison of three perturbation molecular dynamics methods for modeling conformational transitions H Huang, E Ozkirimli, CB Post Journal of Chemical Theory and Computation 5 (5), 1304-1314, 2009 | 64 | 2009 |
| Balancing methods for multi-label text classification with long-tailed class distribution Y Huang, B Giledereli, A Köksal, A Özgür, E Ozkirimli arXiv preprint arXiv:2109.04712, 2021 | 63 | 2021 |
| A novel methodology on distributed representations of proteins using their interacting ligands H Öztürk, E Ozkirimli, A Özgür Bioinformatics 34 (13), i295-i303, 2018 | 44 | 2018 |
| A survey on causal discovery: Theory and practice A Zanga, E Ozkirimli, F Stella International Journal of Approximate Reasoning 151, 101-129, 2022 | 41 | 2022 |
| Alpha7 helix plays an important role in the conformational stability of PTP1B E Ozkirimli Olmez, B Alakent Journal of Biomolecular Structure and Dynamics 28 (5), 675-693, 2011 | 38 | 2011 |
| Generation of an analog-sensitive Syk tyrosine kinase for the study of signaling dynamics from the B cell antigen receptor H Oh, E Ozkirimli, K Shah, ML Harrison, RL Geahlen Journal of biological chemistry 282 (46), 33760-33768, 2007 | 36 | 2007 |
| ChemBoost: A Chemical Language Based Approach for Protein–Ligand Binding Affinity Prediction R Özçelik, H Öztürk, A Özgür, E Ozkirimli Molecular Informatics, 2021 | 30* | 2021 |
| A systematic methodology for large scale compound screening: A case study on the discovery of novel S1PL inhibitors U Deniz, E Ozkirimli, KO Ulgen Journal of Molecular Graphics and Modelling 63, 110-124, 2016 | 27 | 2016 |
| The uptake mechanism of the cell penetrating pVEC peptide IO Akdag, E Ozkirimli | 26 | 2013 |
| An evolutionarily conserved allosteric site modulates beta-lactamase activity FG Avci, FE Altinisik, D Vardar Ulu, E Ozkirimli Olmez, B Sariyar Akbulut Journal of enzyme inhibition and medicinal chemistry 31 (sup3), 33-40, 2016 | 24 | 2016 |
| Superior inhibition of influenza virus hemagglutinin-mediated fusion by indole-substituted spirothiazolidinones G Cihan-Üstündağ, M Zopun, E Vanderlinden, E Ozkirimli, L Persoons, ... Bioorganic & medicinal chemistry 28 (1), 115130, 2020 | 23 | 2020 |
Arzucan OzgurDepartment of Computer Engineering, Bogazici University在 boun.edu.tr 的电子邮件经过验证
