The Capsaspora genome reveals a complex unicellular prehistory of animals H Suga, Z Chen, A De Mendoza, A Sebé-Pedrós, MW Brown, E Kramer, ... Nature communications 4 (1), 2325, 2013 | 314 | 2013 |
Cnidarian cell type diversity and regulation revealed by whole-organism single-cell RNA-Seq A Sebé-Pedrós, B Saudemont, E Chomsky, F Plessier, MP Mailhé, ... Cell 173 (6), 1520-1534. e20, 2018 | 309 | 2018 |
The origin of Metazoa: a unicellular perspective A Sebé-Pedrós, BM Degnan, I Ruiz-Trillo Nature Reviews Genetics 18 (8), 498-512, 2017 | 297 | 2017 |
MetaCell: analysis of single-cell RNA-seq data using K-nn graph partitions Y Baran, A Bercovich, A Sebe-Pedros, Y Lubling, A Giladi, E Chomsky, ... Genome biology 20, 1-19, 2019 | 270 | 2019 |
Early metazoan cell type diversity and the evolution of multicellular gene regulation A Sebé-Pedrós, E Chomsky, K Pang, D Lara-Astiaso, F Gaiti, Z Mukamel, ... Nature ecology & evolution 2 (7), 1176-1188, 2018 | 270 | 2018 |
Ancient origin of the integrin-mediated adhesion and signaling machinery A Sebé-Pedrós, AJ Roger, FB Lang, N King, I Ruiz-Trillo Proceedings of the National Academy of Sciences 107 (22), 10142-10147, 2010 | 264 | 2010 |
Transcription factor evolution in eukaryotes and the assembly of the regulatory toolkit in multicellular lineages A de Mendoza, A Sebé-Pedrós, MS Šestak, M Matejčić, G Torruella, ... Proceedings of the National Academy of Sciences 110 (50), E4858-E4866, 2013 | 232 | 2013 |
Unexpected Repertoire of Metazoan Transcription Factors in the Unicellular Holozoan Capsaspora owczarzaki A Sebé-Pedrós, A de Mendoza, BF Lang, BM Degnan, I Ruiz-Trillo Molecular biology and evolution 28 (3), 1241-1254, 2011 | 229 | 2011 |
Regulated aggregative multicellularity in a close unicellular relative of metazoa A Sebé-Pedrós, M Irimia, J Del Campo, H Parra-Acero, C Russ, ... Elife 2, e01287, 2013 | 193 | 2013 |
The dynamic regulatory genome of Capsaspora and the origin of animal multicellularity A Sebé-Pedrós, C Ballaré, H Parra-Acero, C Chiva, JJ Tena, E Sabidó, ... Cell 165 (5), 1224-1237, 2016 | 190 | 2016 |
The evolution of the GPCR signaling system in eukaryotes: modularity, conservation, and the transition to metazoan multicellularity A De Mendoza, A Sebe-Pedros, I Ruiz-Trillo Genome biology and evolution 6 (3), 606-619, 2014 | 187 | 2014 |
Evolution and classification of myosins, a paneukaryotic whole-genome approach A Sebe-Pedros, X Grau-Bove, TA Richards, I Ruiz-Trillo Genome biology and evolution 6 (2), 290-305, 2014 | 146 | 2014 |
A stony coral cell atlas illuminates the molecular and cellular basis of coral symbiosis, calcification, and immunity S Levy, A Elek, X Grau-Bové, S Menéndez-Bravo, M Iglesias, A Tanay, ... Cell 184 (11), 2973-2987. e18, 2021 | 145 | 2021 |
Premetazoan Origin of the Hippo Signaling Pathway A Sebé-Pedrós, Y Zheng, I Ruiz-Trillo, D Pan Cell Reports 1 (1), 13-20, 2012 | 134 | 2012 |
Early evolution of the T-box transcription factor family A Sebé-Pedrós, A Ariza-Cosano, MT Weirauch, S Leininger, A Yang, ... Proceedings of the National Academy of Sciences 110 (40), 16050-16055, 2013 | 99 | 2013 |
Insights into the origin of metazoan filopodia and microvilli A Sebé-Pedrós, P Burkhardt, N Sánchez-Pons, SR Fairclough, BF Lang, ... Molecular Biology and Evolution 30 (9), 2013-2023, 2013 | 89 | 2013 |
Global transcriptome analysis of the aphelid Paraphelidium tribonemae supports the phagotrophic origin of fungi G Torruella, X Grau-Bové, D Moreira, SA Karpov, JA Burns, ... Communications Biology 1 (1), 231, 2018 | 86 | 2018 |
The eukaryotic ancestor had a complex ubiquitin signaling system of archaeal origin X Grau-Bové, A Sebé-Pedrós, I Ruiz-Trillo Molecular biology and evolution 32 (3), 726-739, 2015 | 73 | 2015 |
High-throughput proteomics reveals the unicellular roots of animal phosphosignaling and cell differentiation A Sebé-Pedrós, MI Peña, S Capella-Gutiérrez, M Antó, T Gabaldón, ... Developmental cell 39 (2), 186-197, 2016 | 67 | 2016 |
ACME dissociation: a versatile cell fixation-dissociation method for single-cell transcriptomics H García-Castro, NJ Kenny, M Iglesias, P Álvarez-Campos, V Mason, ... Genome biology 22, 1-34, 2021 | 64 | 2021 |