| TFAP2C-and p63-dependent networks sequentially rearrange chromatin landscapes to drive human epidermal lineage commitment L Li, Y Wang, JL Torkelson, G Shankar, JM Pattison, HH Zhen, F Fang, ... Cell Stem Cell 24 (2), 271-284. e8, 2019 | 81 | 2019 |
| Chromatin accessibility landscape and regulatory network of high-altitude hypoxia adaptation J Xin, H Zhang, Y He, Z Duren, C Bai, L Chen, X Luo, DS Yan, C Zhang, ... Nature communications 11 (1), 4928, 2020 | 55 | 2020 |
| Time course regulatory analysis based on paired expression and chromatin accessibility data Z Duren, X Chen, J Xin, Y Wang, WH Wong Genome research 30 (4), 622-634, 2020 | 41 | 2020 |
| Drosophila TRF2 and TAF9 regulate lipid droplet size and phospholipid fatty acid composition W Fan, SM Lam, J Xin, X Yang, Z Liu, Y Liu, Y Wang, G Shui, X Huang PLoS genetics 13 (3), e1006664, 2017 | 32 | 2017 |
| Regulatory analysis of single cell multiome gene expression and chromatin accessibility data with scREG Z Duren, F Chang, F Naqing, J Xin, Q Liu, WH Wong Genome biology 23 (1), 114, 2022 | 24 | 2022 |
| Sc-compReg enables the comparison of gene regulatory networks between conditions using single-cell data Z Duren, WS Lu, JG Arthur, P Shah, J Xin, F Meschi, ML Li, CM Nemec, ... Nature Communications 12 (1), 4763, 2021 | 21 | 2021 |
| Genetic adaptation of skin pigmentation in highland Tibetans Z Yang, C Bai, Y Pu, Q Kong, Y Guo, Ouzhuluobu, Gengdeng, X Liu, ... Proceedings of the National Academy of Sciences 119 (40), e2200421119, 2022 | 15 | 2022 |
| Identifying network biomarkers based on protein-protein interactions and expression data J Xin, X Ren, L Chen, Y Wang BMC medical genomics 8 (Suppl 2), S11, 2015 | 14 | 2015 |
| A semisupervised classification approach for multidomain networks with domain selection C Chen, J Xin, Y Wang, L Chen, MK Ng IEEE Transactions on Neural Networks and Learning Systems 30 (1), 269-283, 2018 | 13 | 2018 |
| Lipid-gene regulatory network reveals coregulations of triacylglycerol with phosphatidylinositol/lysophosphatidylinositol and with hexosyl-ceramide W Wang, J Xin, X Yang, SM Lam, G Shui, Y Wang, X Huang Biochimica et Biophysica Acta (BBA)-Molecular and Cell Biology of Lipids …, 2019 | 11 | 2019 |
| ZokorDB: tissue specific regulatory network annotation for non‐coding elements of plateau zokor J Xin, J Hao, L Chen, T Zhang, L Li, L Chen, W Zhao, X Lu, P Shi, Y Wang Quantitative Biology 8 (1), 43-50, 2020 | 5 | 2020 |
| Reusability report: compressing regulatory networks to vectors for interpreting gene expression and genetic variants W Zeng, J Xin, R Jiang, Y Wang Nature Machine Intelligence 3 (7), 576-580, 2021 | 3 | 2021 |
| Heritability enrichment in context-specific regulatory networks improves phenotype-relevant tissue identification Z Feng, Z Duren, J Xin, Q Yuan, Y He, B Su, WH Wong, Y Wang Elife 11, e82535, 2022 | 2 | 2022 |
| scTIE: data integration and inference of gene regulation using single-cell temporal multimodal data Y Lin, TY Wu, X Chen, S Wan, B Chao, J Xin, JYH Yang, WH Wong, ... bioRxiv, 2023 | 1 | 2023 |
| Data integration and inference of gene regulation using single-cell temporal multimodal data with scTIE Y Lin, TY Wu, X Chen, S Wan, B Chao, J Xin, JYH Yang, WH Wong, ... Genome research 34 (1), 119-133, 2024 | | 2024 |
| Regulatory analysis of single cell multiome gene expression and chromatin accessibility data with scREG J Xin, Q Liu, WH Wong, Z Duren, F Naqing, F Chang figshare Academic Research System, 2022 | | 2022 |
