sRNAtoolbox: an integrated collection of small RNA research tools A Rueda, G Barturen, R Lebrón, C Gómez-Martín, Á Alganza, JL Oliver, ... Nucleic acids research 43 (W1), W467-W473, 2015 | 225 | 2015 |
sRNAbench and sRNAtoolbox 2019: intuitive fast small RNA profiling and differential expression E Aparicio-Puerta, R Lebrón, A Rueda, C Gómez-Martín, S Giannoukakos, ... Nucleic acids research 47 (W1), W530-W535, 2019 | 165 | 2019 |
sRNAbench: profiling of small RNAs and its sequence variants in single or multi-species high-throughput experiments G Barturen, A Rueda, M Hamberg, A Alganza, R Lebron, M Kotsyfakis, ... Methods in Next Generation Sequencing 1 (1), 21-31, 2014 | 99 | 2014 |
Identification of tomato miRNAs responsive to root colonization by endophytic Pochonia chlamydosporia I Pentimone, R Lebrón, M Hackenberg, LC Rosso, M Colagiero, F Nigro, ... Applied microbiology and biotechnology 102, 907-919, 2018 | 27 | 2018 |
NGSmethDB 2017: enhanced methylomes and differential methylation R Lebron, C Gómez-Martín, P Carpena, P Bernaola-Galván, G Barturen, ... Nucleic Acids Research, gkw996, 2016 | 20 | 2016 |
liqDB: a small-RNAseq knowledge discovery database for liquid biopsy studies E Aparicio-Puerta, D Jáspez, R Lebron, D Koppers-Lalic, JA Marchal, ... Nucleic acids research 47 (D1), D113-D120, 2019 | 17 | 2019 |
Driven progressive evolution of genome sequence complexity in Cyanobacteria A Moya, JL Oliver, M Verdú, L Delaye, V Arnau, P Bernaola-Galván, ... Scientific reports 10 (1), 19073, 2020 | 15 | 2020 |
DNA clustering and genome complexity F Dios, G Barturen, R Lebrón, A Rueda, M Hackenberg, JL Oliver Computational biology and chemistry 53, 71-78, 2014 | 14 | 2014 |
Functional characterization of the tomato HAIRPLUS gene reveals the implication of the epigenome in the control of glandular trichome formation R Fonseca, C Capel, FJ Yuste-Lisbona, JL Quispe, C Gómez-Martín, ... Horticulture Research 9, uhab015, 2022 | 10 | 2022 |
Tomato POLLEN DEFICIENT 2 encodes a G-type lectin receptor kinase required for viable pollen grain formation R Micol-Ponce, M García-Alcázar, R Lebrón, C Capel, B Pineda, ... Journal of Experimental Botany 74 (1), 178-193, 2023 | 8 | 2023 |
Prediction of CpG islands as an intrinsic clustering property found in many eukaryotic DNA sequences and its relation to DNA methylation C Gómez-Martín, R Lebrón, JL Oliver, M Hackenberg CpG Islands: Methods and Protocols, 31-47, 2018 | 7 | 2018 |
A tomato EMS-mutagenized population provides new valuable resources for gene discovery and breeding of developmental traits R Fonseca, C Capel, R Nieto-Canseco, A Ortiz-Atienza, S Bretones, ... Plants 11 (19), 2453, 2022 | 6 | 2022 |
Insights into the functional role of tomato TM6 as a transcriptional regulator of flower development R Fonseca, C Capel, R Lebrón, A Ortiz-Atienza, FJ Yuste-Lisbona, ... Horticulture Research 11 (3), uhae019, 2024 | 4 | 2024 |
Transcriptional Dynamics and Candidate Genes Involved in Pod Maturation of Common Bean (Phaseolus vulgaris L.) C Gómez-Martín, C Capel, AM González, R Lebrón, FJ Yuste-Lisbona, ... Plants 9 (4), 545, 2020 | 4 | 2020 |
sRNAtoolboxVM: small RNA analysis in a virtual machine C Gómez-Martín, R Lebrón, A Rueda, JL Oliver, M Hackenberg MicroRNA Detection and Target Identification: Methods and Protocols, 149-174, 2017 | 3 | 2017 |
The virus-induced upregulation of the miR-183/96/182 cluster and the FoxO family protein members are not required for efficient replication of HSV-1 A Zubković, I Žarak, I Ratkaj, F Rokić, M Jekić, M Pribanić Matešić, ... Viruses 14 (8), 1661, 2022 | 2 | 2022 |
Jupyter Notebooks as Computational Thinking Tools for Teaching and Lifelong Learning in Biotechnology R Lebrón, A Ortiz-Atienza, S Bretones, C Capel, FJ Yuste-Lisbona, ... Erasmus Scientific Days 2022 (ESD 2022), 167-175, 2023 | 1 | 2023 |
Decoding gene expression signatures underlying vegetative to inflorescence meristem transition in the common bean AM González, R Lebrón, FJ Yuste-Lisbona, C Gómez-Martín, ... International journal of molecular sciences 23 (23), 14783, 2022 | 1 | 2022 |
The Virus-Induced Upregulation of the miR-183/96/182 Cluster and the FoxO Family Protein Members Are Not Required for Efficient Replication of HSV-1. Viruses 2022, 14, 1661 A Zubkovic, I Žarak, I Ratkaj, F Rokic, M Jekic, M Pribanic Matešic, ... s Note: MDPI stays neutral with regard to jurisdictional claims in published …, 2022 | 1 | 2022 |
Tracking evolutionary trends towards increasing complexity: a case study in Cyanobacteria A Moya, JL Oliver, M Verdú, L Delaye, V Arnau, P Bernaola-Galván, ... bioRxiv, 2020.01. 29.924464, 2020 | 1 | 2020 |