An atlas of active enhancers across human cell types and tissues R Andersson, C Gebhard, I Miguel-Escalada, I Hoof, J Bornholdt, M Boyd, ... Nature 507 (7493), 455-461, 2014 | 2670 | 2014 |
A promoter-level mammalian expression atlas Nature 507 (7493), 462-470, 2014 | 1732 | 2014 |
Regulation of gene expression by small non‐coding RNAs: a quantitative view Y Shimoni, G Friedlander, G Hetzroni, G Niv, S Altuvia, O Biham, ... Molecular systems biology 3 (1), 138, 2007 | 389 | 2007 |
Elucidating compound mechanism of action by network perturbation analysis JH Woo, Y Shimoni, WS Yang, P Subramaniam, A Iyer, P Nicoletti, ... Cell 162 (2), 441-451, 2015 | 352 | 2015 |
Improving breast cancer survival analysis through competition-based multidimensional modeling E Bilal, J Dutkowski, J Guinney, IS Jang, BA Logsdon, G Pandey, ... PLoS computational biology 9 (5), e1003047, 2013 | 101 | 2013 |
Stochastic analysis of the SOS response in Escherichia coli Y Shimoni, S Altuvia, H Margalit, O Biham PloS one 4 (5), e5363, 2009 | 61 | 2009 |
Characterization of pure quantum states of multiple qubits using the Groverian entanglement measure Y Shimoni, D Shapira, O Biham Physical Review A—Atomic, Molecular, and Optical Physics 69 (6), 062303, 2004 | 60 | 2004 |
Benchmarking framework for performance-evaluation of causal inference analysis Y Shimoni, C Yanover, E Karavani, Y Goldschmnidt arXiv preprint arXiv:1802.05046, 2018 | 49 | 2018 |
Entangled quantum states generated by Shor’s factoring algorithm Y Shimoni, D Shapira, O Biham Physical Review A—Atomic, Molecular, and Optical Physics 72 (6), 062308, 2005 | 41 | 2005 |
Role of cell-to-cell variability in activating a positive feedback antiviral response in human dendritic cells J Hu, G Nudelman, Y Shimoni, M Kumar, Y Ding, C López, F Hayot, ... PLoS One 6 (2), e16614, 2011 | 40 | 2011 |
An evaluation toolkit to guide model selection and cohort definition in causal inference Y Shimoni, E Karavani, S Ravid, P Bak, TH Ng, SH Alford, D Meade, ... arXiv preprint arXiv:1906.00442, 2019 | 36 | 2019 |
Groverian measure of entanglement for mixed states D Shapira, Y Shimoni, O Biham Physical Review A—Atomic, Molecular, and Optical Physics 73 (4), 044301, 2006 | 35 | 2006 |
Association between expression of random gene sets and survival is evident in multiple cancer types and may be explained by sub-classification Y Shimoni PLoS computational biology 14 (2), e1006026, 2018 | 24 | 2018 |
Multi-scale stochastic simulation of diffusion-coupled agents and its application to cell culture simulation Y Shimoni, G Nudelman, F Hayot, SC Sealfon PloS one 6 (12), e29298, 2011 | 20 | 2011 |
Formation of multipartite entanglement using random quantum gates Y Most, Y Shimoni, O Biham Physical Review A—Atomic, Molecular, and Optical Physics 76 (2), 022328, 2007 | 20 | 2007 |
Analysis of Grover’s quantum search algorithm as a dynamical system O Biham, D Shapira, Y Shimoni Physical Review A 68 (2), 022326, 2003 | 19 | 2003 |
Entanglement of periodic states, the quantum fourier transform, and shor’s factoring algorithm Y Most, Y Shimoni, O Biham Physical Review A—Atomic, Molecular, and Optical Physics 81 (5), 052306, 2010 | 14 | 2010 |
Groverian entanglement measure of pure quantum states with arbitrary partitions Y Shimoni, O Biham Physical Review A—Atomic, Molecular, and Optical Physics 75 (2), 022308, 2007 | 14 | 2007 |
Algebraic analysis of quantum search with pure and mixed states D Shapira, Y Shimoni, O Biham Physical Review A—Atomic, Molecular, and Optical Physics 71 (4), 042320, 2005 | 14 | 2005 |
Plato's cave algorithm: inferring functional signaling networks from early gene expression shadows Y Shimoni, MY Fink, S Choi, SC Sealfon PLoS computational biology 6 (6), e1000828, 2010 | 13 | 2010 |