Highly evolvable malaria vectors: The genomes of 16 Anopheles mosquitoes DE Neafsey, RM Waterhouse, MR Abai, SS Aganezov, MA Alekseyev, ... Science 347 (6217), 1258522, 2015 | 589 | 2015 |
The RNA modification landscape in human disease N Jonkhout, J Tran, MA Smith, N Schonrock, JS Mattick, EM Novoa RNA, 2017 | 508 | 2017 |
Speeding with control: codon usage, tRNAs, and ribosomes EM Novoa, LR de Pouplana Trends in Genetics 28 (11), 574-581, 2012 | 390 | 2012 |
Accurate detection of m6A RNA modifications in native RNA sequences H Liu, O Begik, MC Lucas, JM Ramirez, CE Mason, D Wiener, S Schwartz, ... Nature communications 10 (1), 4079, 2019 | 381 | 2019 |
A role for tRNA modifications in genome structure and codon usage EM Novoa, M Pavon-Eternod, T Pan, LR de Pouplana Cell 149 (1), 202-213, 2012 | 293 | 2012 |
Quantitative profiling of pseudouridylation dynamics in native RNAs with nanopore sequencing O Begik, MC Lucas, LP Pryszcz, JM Ramirez, R Medina, I Milenkovic, ... Nature biotechnology 39 (10), 1278-1291, 2021 | 178 | 2021 |
Analyses of mRNA structure dynamics identify embryonic gene regulatory programs JD Beaudoin, EM Novoa, CE Vejnar, V Yartseva, CM Takacs, M Kellis, ... Nature structural & molecular biology 25 (8), 677-686, 2018 | 99 | 2018 |
Ensemble docking from homology models EM Novoa, LR Pouplana, X Barril, M Orozco Journal of Chemical Theory and Computation 6 (8), 2547-2557, 2010 | 82 | 2010 |
Analogs of natural aminoacyl-tRNA synthetase inhibitors clear malaria in vivo EM Novoa, N Camacho, A Tor, B Wilkinson, S Moss, P Marín-García, ... Proceedings of the National Academy of Sciences 111 (51), E5508-E5517, 2014 | 79 | 2014 |
High-throughput 5′ UTR engineering for enhanced protein production in non-viral gene therapies J Cao, EM Novoa, Z Zhang, WCW Chen, D Liu, GCG Choi, ASL Wong, ... Nature communications 12 (1), 4138, 2021 | 75 | 2021 |
Computational methods for RNA modification detection from nanopore direct RNA sequencing data M Furlan, A Delgado-Tejedor, L Mulroney, M Pelizzola, EM Novoa, ... RNA biology 18 (sup1), 31-40, 2021 | 71 | 2021 |
Integrative analyses of the RNA modification machinery reveal tissue-and cancer-specific signatures O Begik, MC Lucas, H Liu, JM Ramirez, JS Mattick, EM Novoa Genome biology 21, 1-24, 2020 | 64 | 2020 |
Elucidation of codon usage signatures across the domains of life EM Novoa, I Jungreis, O Jaillon, M Kellis Molecular Biology and Evolution 36 (10), 2328-2339, 2019 | 61 | 2019 |
Saturation of recognition elements blocks evolution of new tRNA identities A Saint-Léger, C Bello, PD Dans, AG Torres, EM Novoa, N Camacho, ... Science advances 2 (4), e1501860, 2016 | 58 | 2016 |
Quantitative analysis of tRNA abundance and modifications by nanopore RNA sequencing MC Lucas, LP Pryszcz, R Medina, I Milenkovic, N Camacho, V Marchand, ... Nature Biotechnology 42 (1), 72-86, 2024 | 55 | 2024 |
A high-throughput screening and computation platform for identifying synthetic promoters with enhanced cell-state specificity (SPECS) MR Wu, L Nissim, D Stupp, E Pery, A Binder-Nissim, K Weisinger, ... Nature communications 10 (1), 2880, 2019 | 55 | 2019 |
Charting the unknown epitranscriptome EM Novoa, CE Mason, JS Mattick Nature Reviews Molecular Cell Biology 18 (6), 339-340, 2017 | 53 | 2017 |
Molecular barcoding of native RNAs using nanopore sequencing and deep learning MA Smith, T Ersavas, JM Ferguson, H Liu, MC Lucas, O Begik, L Bojarski, ... Genome research 30 (9), 1345-1353, 2020 | 51 | 2020 |
MasterOfPores: a workflow for the analysis of oxford nanopore direct RNA sequencing datasets L Cozzuto, H Liu, LP Pryszcz, TH Pulido, A Delgado-Tejedor, ... Frontiers in Genetics 11, 211, 2020 | 47 | 2020 |
EpiNano: Detection of m6A RNA Modifications Using Oxford Nanopore Direct RNA Sequencing H Liu, O Begik, EM Novoa RNA Modifications: Methods and Protocols, 31-52, 2021 | 45 | 2021 |