A Rapid, Cost-Effective Tailed Amplicon Method for Sequencing SARS-CoV-2 DM Gohl, J Garbe, P Grady, J Daniel, RHB Watson, B Auch, A Nelson, ... BMC genomics, 2020 | 107 | 2020 |
Diverse AR gene rearrangements mediate resistance to androgen receptor inhibitors in metastatic prostate cancer Y Li, R Yang, CM Henzler, Y Ho, C Passow, B Auch, S Carreira, ... Clinical Cancer Research 26 (8), 1965-1976, 2020 | 69 | 2020 |
The Genome of the Zebra Mussel, Dreissena polymorpha: A Resource for Comparative Genomics, Invasion Genetics, and Biocontrol MA McCartney, B Auch, T Kono, S Mallez, Y Zhang, A Obille, A Becker, ... G3 Genes| Genomes| Genetics, 2021 | 35* | 2021 |
Measuring sequencer size bias using REcount: a novel method for highly accurate Illumina sequencing-based quantification DM Gohl, A Magli, J Garbe, A Becker, DM Johnson, S Anderson, B Auch, ... Genome biology 20, 1-17, 2019 | 34 | 2019 |
Inhalation exposure to cigarette smoke and inflammatory agents induces epigenetic changes in the lung CL Seiler, J Song, D Kotandeniya, J Chen, TJY Kono, Q Han, M Colwell, ... Scientific reports 10 (1), 1-15, 2020 | 30 | 2020 |
Analytical validation of a COVID-19 qRT-PCR detection assay using a 384-well format and three extraction methods AC Nelson, B Auch, M Schomaker, DM Gohl, P Grady, D Johnson, ... BioRxiv, 2020.04. 02.022186, 2020 | 22 | 2020 |
Variability and bias in microbiome metagenomic sequencing: an interlaboratory study comparing experimental protocols SP Forry, SL Servetas, JG Kralj, K Soh, M Hadjithomas, R Cano, M Carlin, ... Scientific Reports 14 (1), 9785, 2024 | 13 | 2024 |
Accurate viral genome reconstruction and host assignment with proximity-ligation sequencing G Uritskiy, M Press, C Sun, GD Huerta, AA Zayed, A Wiser, J Grove, ... bioRxiv, 2021.06. 14.448389, 2021 | 13 | 2021 |
Comparative analysis of genome-wide DNA methylation identifies patterns that associate with conserved transcriptional programs in osteosarcoma LJ Mills, MC Scott, P Shah, AR Cunanan, A Deshpande, B Auch, B Curtin, ... Bone 158, 115716, 2022 | 10 | 2022 |
Dissecting and Tuning Primer Editing by Proofreading Polymerases DM Gohl, B Auch, A Certano, B LeFrancois, A Bouevitch, E Doukhanine, ... Nucleic Acids Research, 2021 | 10 | 2021 |
Multiscale, multi-perspective imaging assisted robotic microinjection of 3D biological structures AS Joshi, AD Alegria, B Auch, K Khosla, JB Mendana, K Liu, J Bischof, ... 2021 43rd Annual International Conference of the IEEE Engineering in …, 2021 | 6 | 2021 |
AR gene rearrangement analysis in liquid biopsies reveals heterogeneity in lethal prostate cancer M Daniel, TP Knutson, JM Sperger, Y Li, A Singh, CN Stahlfeld, C Passow, ... Endocrine-Related Cancer 28 (9), 645-655, 2021 | 6 | 2021 |
High-throughput genetic manipulation of multicellular organisms using a machine-vision guided embryonic microinjection robot AD Alegria, AS Joshi, JB Mendana, K Khosla, KT Smith, B Auch, ... Genetics 226 (4), iyae025, 2024 | 3 | 2024 |
A machine vision guided robot for fully automated embryonic microinjection AD Alegria, AS Joshi, JB Mendana, K Khosla, K Smith, BT Auch, ... bioRxiv, 2023.04. 25.538280, 2023 | 2 | 2023 |
Highly accurate metagenome-assembled genomes from human gut microbiota using long-read assembly, binning, and consolidation methods DM Portik, X Feng, G Benoit, DJ Nasko, B Auch, SJ Bryson, R Cano, ... bioRxiv, 2024.05. 10.593587, 2024 | 1 | 2024 |
Deterministic Genetic Barcoding for Multiplexed Behavioral and Single-Cell Transcriptomic Studies JB Mendana, M Donovan, L Gengelbach, B Auch, J Garbe, D Gohl bioRxiv, 2023.03. 29.534817, 2023 | 1 | 2023 |
Multi-perspective microscopic imaging guided microinjection of microscopic objects across large field of views SB Kodandaramaiah, DM Gohl, A Alegria, AS Joshi, B Auch US Patent App. 17/656,130, 2022 | 1 | 2022 |
Development of a computer-guided robot for microinjection of embryos for the fruit fly, Drosophila melanogaster AS Joshi, SB Kodandaramaiah, AD Alegria, DM Gohl, B Auch The Allied Genetics Conference, 2020 | 1* | 2020 |
Metagenomic insights into an enigmatic gammaproteobacterium that is important for carbon cycling in cave ecosystems worldwide DS Jones, KM Green, A Brown, ZE Havlena, MB Best, DE Northup, ... bioRxiv, 2024.08. 23.608578, 2024 | | 2024 |
Proxi-RIMS-seq2 applied to native microbiomes uncovers hundreds of known and novel m5C methyltransferase specificities. W Yang, Y Luyten, E Reister, H Mangelson, Z Sisson, B Auch, I Liachko, ... bioRxiv, 2024.07. 15.603628, 2024 | | 2024 |