| Transcriptional gene network inference from a massive dataset elucidates transcriptome organization and gene function V Belcastro, V Siciliano, F Gregoretti, P Mithbaokar, G Dharmalingam, ... Nucleic acids research 39 (20), 8677-8688, 2011 | 122 | 2011 |
| Lamin A/C sustains PcG protein architecture, maintaining transcriptional repression at target genes E Cesarini, C Mozzetta, F Marullo, F Gregoretti, A Gargiulo, M Columbaro, ... Journal of Cell Biology 211 (3), 533-551, 2015 | 109 | 2015 |
| Mantra 2.0: an online collaborative resource for drug mode of action and repurposing by network analysis D Carrella, F Napolitano, R Rispoli, M Miglietta, A Carissimo, L Cutillo, ... Bioinformatics 30 (12), 1787-1788, 2014 | 85 | 2014 |
| MLL4-associated condensates counterbalance Polycomb-mediated nuclear mechanical stress in Kabuki syndrome A Fasciani, S D’Annunzio, V Poli, L Fagnocchi, S Beyes, D Michelatti, ... Nature genetics 52 (12), 1397-1411, 2020 | 69 | 2020 |
| Dysfunctional polycomb transcriptional repression contributes to lamin A/C–dependent muscular dystrophy A Bianchi, C Mozzetta, G Pegoli, F Lucini, S Valsoni, V Rosti, C Petrini, ... The Journal of clinical investigation 130 (5), 2408-2421, 2020 | 46 | 2020 |
| Alterations of redox and iron metabolism accompany the development of HIV latency IL Shytaj, B Lucic, M Forcato, C Penzo, J Billingsley, V Laketa, S Bosinger, ... The EMBO Journal 39 (9), e102209, 2020 | 45 | 2020 |
| Nucleoplasmic Lamin A/C and Polycomb group of proteins: An evolutionarily conserved interplay F Marullo, E Cesarini, L Antonelli, F Gregoretti, G Oliva, C Lanzuolo Nucleus 7 (2), 103-111, 2016 | 44 | 2016 |
| A parallel implementation of the network identification by multiple regression (NIR) algorithm to reverse-engineer regulatory gene networks F Gregoretti, V Belcastro, D di Bernardo, G Oliva PloS one 5 (4), e10179, 2010 | 41 | 2010 |
| SAMMY-seq reveals early alteration of heterochromatin and deregulation of bivalent genes in Hutchinson-Gilford Progeria Syndrome E Sebestyén, F Marullo, F Lucini, C Petrini, A Bianchi, S Valsoni, I Olivieri, ... Nature communications 11 (1), 6274, 2020 | 32 | 2020 |
| A multi‐grained distributed implementation of the parallel Block Conjugate Gradient algorithm A Murli, L D'Amore, G Laccetti, F Gregoretti, G Oliva Concurrency and Computation: Practice and Experience 22 (15), 2053-2072, 2010 | 28 | 2010 |
| MGF: a grid-enabled MPI library F Gregoretti, G Laccetti, A Murli, G Oliva, U Scafuri Future Generation Computer Systems 24 (2), 158-165, 2008 | 24 | 2008 |
| Reverse engineering and analysis of genome-wide gene regulatory networks from gene expression profiles using high-performance computing V Belcastro, F Gregoretti, V Siciliano, M Santoro, G D'Angelo, G Oliva, ... IEEE/ACM Transactions on Computational Biology and Bioinformatics 9 (3), 668-678, 2011 | 21 | 2011 |
| 4q-D4Z4 chromatin architecture regulates the transcription of muscle atrophic genes in facioscapulohumeral muscular dystrophy A Cortesi, M Pesant, S Sinha, F Marasca, E Sala, F Gregoretti, L Antonelli, ... Genome research 29 (6), 883-895, 2019 | 20 | 2019 |
| Active inference tree search in large POMDPs D Maisto, F Gregoretti, K Friston, G Pezzulo arXiv preprint arXiv:2103.13860, 2021 | 16 | 2021 |
| A CUDA-based implementation of an improved SPH method on GPU L Antonelli, E Francomano, F Gregoretti Applied Mathematics and Computation 409, 125482, 2021 | 10 | 2021 |
| An automatic segmentation method combining an active contour model and a classification technique for detecting polycomb-group proteinsin high-throughput microscopy images F Gregoretti, E Cesarini, C Lanzuolo, G Oliva, L Antonelli Polycomb Group Proteins: Methods and Protocols, 181-197, 2016 | 8 | 2016 |
| A distributed combustion solver for engine simulations on grids L Antonelli, P Belardini, P D’Ambra, F Gregoretti, G Oliva Journal of computational and applied mathematics 226 (2), 197-204, 2009 | 5 | 2009 |
| Multi-site Jobs Management System (MJMS): A tool to manage multi-site MPI applications execution in Grid environment J Frey, F Gregoretti, G Laccetti, A Murli, G Oliva Proceedings of the HPDC 15, 2006 | 5 | 2006 |
| An Algorithm for the Analysis of the 3D Spatial Organization of the Genome F Gregoretti, A Cortesi, G Oliva, B Bodega, L Antonelli Capturing Chromosome Conformation: Methods and Protocols, 299-320, 2021 | 3 | 2021 |
| Operations structure for the management, control and support of the INFN-GRID/Grid. It production infrastructure MC Vistoli, L Gaido, F Calzolari arXiv preprint physics/0701067, 2007 | 3 | 2007 |
