| The extracellular architecture of adherens junctions revealed by crystal structures of type I cadherins OJ Harrison, X Jin, S Hong, F Bahna, G Ahlsen, J Brasch, Y Wu, ... Structure 19 (2), 244-256, 2011 | 459 | 2011 |
| Transforming binding affinities from three dimensions to two with application to cadherin clustering Y Wu, J Vendome, L Shapiro, A Ben-Shaul, B Honig Nature 475 (7357), 510-513, 2011 | 246 | 2011 |
| Cooperativity between trans and cis interactions in cadherin-mediated junction formation Y Wu, X Jin, O Harrison, L Shapiro, BH Honig, A Ben-Shaul Proceedings of the National Academy of Sciences 107 (41), 17592-17597, 2010 | 179 | 2010 |
| OPUS‐Ca: A knowledge‐based potential function requiring only Cα positions Y Wu, M Lu, M Chen, J Li, J Ma Protein science 16 (7), 1449-1463, 2007 | 104 | 2007 |
| General principles of binding between cell surface receptors and multi-specific ligands: A computational study J Chen, SC Almo, Y Wu PLoS computational biology 13 (10), e1005805, 2017 | 54 | 2017 |
| Substructure synthesis method for simulating large molecular complexes D Ming, Y Kong, Y Wu, J Ma Proceedings of the National Academy of Sciences 100 (1), 104-109, 2003 | 52 | 2003 |
| Theory and simulations of adhesion receptor dimerization on membrane surfaces Y Wu, B Honig, A Ben-Shaul Biophysical journal 104 (6), 1221-1229, 2013 | 48 | 2013 |
| Determining protein topology from skeletons of secondary structures Y Wu, M Chen, M Lu, Q Wang, J Ma Journal of molecular biology 350 (3), 571-586, 2005 | 45 | 2005 |
| Cadherin clusters stabilized by a combination of specific and nonspecific cis-interactions CJ Thompson, Z Su, VH Vu, Y Wu, DE Leckband, DK Schwartz Elife 9, e59035, 2020 | 44 | 2020 |
| Simulation of F-actin filaments of several microns D Ming, Y Kong, Y Wu, J Ma Biophysical journal 85 (1), 27-35, 2003 | 43 | 2003 |
| Understanding effects of PAMAM dendrimer size and surface chemistry on serum protein binding with discrete molecular dynamics simulations B Wang, Y Sun, TP Davis, PC Ke, Y Wu, F Ding ACS sustainable chemistry & engineering 6 (9), 11704-11715, 2018 | 42 | 2018 |
| A coarse-grained model for the simulations of biomolecular interactions in cellular environments ZR Xie, J Chen, Y Wu The Journal of Chemical Physics 140 (5), 2014 | 41 | 2014 |
| Conformational flexibility of pyruvate dehydrogenase complexes: a computational analysis by quantized elastic deformational model Y Kong, D Ming, Y Wu, JK Stoops, ZH Zhou, J Ma Journal of molecular biology 330 (1), 129-135, 2003 | 39 | 2003 |
| Folding of small helical proteins assisted by small-angle X-ray scattering profiles Y Wu, X Tian, M Lu, M Chen, Q Wang, J Ma Structure 13 (11), 1587-1597, 2005 | 37 | 2005 |
| A computational model for kinetic studies of cadherin binding and clustering J Chen, J Newhall, ZR Xie, D Leckband, Y Wu Biophysical Journal 111 (7), 1507-1518, 2016 | 34 | 2016 |
| Computational modeling of the interplay between cadherin-mediated cell adhesion and Wnt signaling pathway J Chen, ZR Xie, Y Wu PLoS One 9 (6), e100702, 2014 | 31 | 2014 |
| Predicting protein–protein association rates using coarse-grained simulation and machine learning ZR Xie, J Chen, Y Wu Scientific reports 7 (1), 46622, 2017 | 30 | 2017 |
| Refinement of F-actin model against fiber diffraction data by long-range normal modes Y Wu, J Ma Biophysical journal 86 (1), 116-124, 2004 | 28 | 2004 |
| A multiscale and comparative model for receptor binding of 2019 novel coronavirus and the implication of its life cycle in host cells Z Su, Y Wu BioRxiv, 2020.02. 20.958272, 2020 | 25 | 2020 |
| Integrating structural information to study the dynamics of protein-protein interactions in cells B Wang, ZR Xie, J Chen, Y Wu Structure 26 (10), 1414-1424. e3, 2018 | 23 | 2018 |
