| Bend: Benchmarking dna language models on biologically meaningful tasks FI Marin, F Teufel, M Horlacher, D Madsen, D Pultz, O Winther, ... The Twelfth International Conference on Learning Representations, 2023 | 28 | 2023 |
| SND1 binds SARS-CoV-2 negative-sense RNA and promotes viral RNA synthesis through NSP9 N Schmidt, S Ganskih, Y Wei, A Gabel, S Zielinski, H Keshishian, ... Cell 186 (22), 4834-4850. e23, 2023 | 21 | 2023 |
| RNA trafficking and subcellular localization—a review of mechanisms, experimental and predictive methodologies J Wang, M Horlacher, L Cheng, O Winther Briefings in bioinformatics 24 (5), bbad249, 2023 | 13 | 2023 |
| Towards in silico CLIP-seq: predicting protein-RNA interaction via sequence-to-signal learning M Horlacher, N Wagner, L Moyon, K Kuret, N Goedert, M Salvatore, J Ule, ... Genome biology 24 (1), 180, 2023 | 13 | 2023 |
| A systematic benchmark of machine learning methods for protein–RNA interaction prediction M Horlacher, G Cantini, J Hesse, P Schinke, N Goedert, S Londhe, ... Briefings in Bioinformatics 24 (5), bbad307, 2023 | 11 | 2023 |
| DeepLocRNA: an interpretable deep learning model for predicting RNA subcellular localization with domain-specific transfer-learning J Wang, M Horlacher, L Cheng, O Winther Bioinformatics 40 (2), btae065, 2024 | 8 | 2024 |
| A computational map of the human-SARS-CoV-2 protein–RNA interactome predicted at single-nucleotide resolution M Horlacher, S Oleshko, Y Hu, M Ghanbari, G Cantini, P Schinke, ... NAR Genomics and Bioinformatics 5 (1), lqad010, 2023 | 8 | 2023 |
| Transfer learning identifies sequence determinants of cell-type specific regulatory element accessibility M Salvatore, M Horlacher, A Marsico, O Winther, R Andersson NAR genomics and bioinformatics 5 (2), lqad026, 2023 | 7 | 2023 |
| Computational Mapping of the Human-SARS-CoV-2 Protein-RNA Interactome M Horlacher, S Oleshko, Y Hu, M Ghanbari, EE Vergara, N Mueller, ... bioRxiv, 2021 | 4 | 2021 |
| Transfer learning reveals sequence determinants of regulatory element accessibility M Salvatore, M Horlacher, O Winther, R Andersson bioRxiv, 2022.08. 05.502903, 2022 | 2 | 2022 |
| Transfer learning identifies sequence determinants of regulatory element accessibility M Salvatore, M Horlacher, A Marsico, O Winther, R Andersson | 1 | 2022 |
| BEND: Benchmarking DNA Language Models on biologically meaningful tasks F Isa Marin, F Teufel, M Horlacher, D Madsen, D Pultz, O Winther, ... arXiv e-prints, arXiv: 2311.12570, 2023 | | 2023 |
Ole WintherBiology, Univ of Copenhagen, Genomic Medicine, Rigshospitalet and Technical University of Denmark在 bio.ku.dk 的电子邮件经过验证
