| Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2 E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ... Nature biotechnology 37 (8), 852-857, 2019 | 15231 | 2019 |
| Gut microbiota regulate motor deficits and neuroinflammation in a model of Parkinson’s disease TR Sampson, JW Debelius, T Thron, S Janssen, GG Shastri, ZE Ilhan, ... Cell 167 (6), 1469-1480. e12, 2016 | 3189 | 2016 |
| A communal catalogue reveals Earth’s multiscale microbial diversity LR Thompson, JG Sanders, D McDonald, A Amir, J Ladau, KJ Locey, ... Nature 551 (7681), 457-463, 2017 | 2278 | 2017 |
| Critical assessment of metagenome interpretation—a benchmark of metagenomics software A Sczyrba, P Hofmann, P Belmann, D Koslicki, S Janssen, J Dröge, ... Nature methods 14 (11), 1063-1071, 2017 | 754 | 2017 |
| American gut: an open platform for citizen science microbiome research D McDonald, E Hyde, JW Debelius, JT Morton, A Gonzalez, G Ackermann, ... Msystems 3 (3), 10.1128/msystems. 00031-18, 2018 | 686 | 2018 |
| Qiita: rapid, web-enabled microbiome meta-analysis A Gonzalez, JA Navas-Molina, T Kosciolek, D McDonald, ... Nature methods 15 (10), 796-798, 2018 | 550 | 2018 |
| Phylogenetic placement of exact amplicon sequences improves associations with clinical information S Janssen, D McDonald, A Gonzalez, JA Navas-Molina, L Jiang, ZZ Xu, ... Msystems 3 (3), 10.1128/msystems. 00021-18, 2018 | 379* | 2018 |
| A gut bacterial amyloid promotes α-synuclein aggregation and motor impairment in mice TR Sampson, C Challis, N Jain, A Moiseyenko, MS Ladinsky, GG Shastri, ... elife 9, e53111, 2020 | 340 | 2020 |
| Phylogenomics of 10,575 genomes reveals evolutionary proximity between domains Bacteria and Archaea Q Zhu, U Mai, W Pfeiffer, S Janssen, F Asnicar, JG Sanders, ... Nature communications 10 (1), 5477, 2019 | 268 | 2019 |
| The impact of skin care products on skin chemistry and microbiome dynamics A Bouslimani, R da Silva, T Kosciolek, S Janssen, C Callewaert, A Amir, ... BMC biology 17, 1-20, 2019 | 162 | 2019 |
| The RNA shapes studio S Janssen, R Giegerich Bioinformatics 31 (3), 423-425, 2015 | 154 | 2015 |
| A genome-wide survey of sRNAs in the symbiotic nitrogen-fixing alpha-proteobacterium Sinorhizobium meliloti JP Schlüter, J Reinkensmeier, S Daschkey, E Evguenieva-Hackenberg, ... BMC genomics 11 (1), 245, 2010 | 138 | 2010 |
| Environmental toxicants in breast milk of Norwegian mothers and gut bacteria composition and metabolites in their infants at 1 month N Iszatt, S Janssen, V Lenters, C Dahl, H Stigum, R Knight, S Mandal, ... Microbiome 7, 1-14, 2019 | 137 | 2019 |
| KatharoSeq enables high-throughput microbiome analysis from low-biomass samples JJ Minich, Q Zhu, S Janssen, R Hendrickson, A Amir, R Vetter, J Hyde, ... MSystems 3 (3), 10.1128/msystems. 00218-17, 2018 | 116* | 2018 |
| Vitamin D metabolites and the gut microbiome in older men RL Thomas, L Jiang, JS Adams, ZZ Xu, J Shen, S Janssen, G Ackermann, ... Nature communications 11 (1), 5997, 2020 | 108 | 2020 |
| An intact gut microbiome protects genetically predisposed mice against leukemia C Vicente-Dueñas, S Janssen, M Oldenburg, F Auer, I González-Herrero, ... Blood, The Journal of the American Society of Hematology 136 (18), 2003-2017, 2020 | 88 | 2020 |
| Assessing taxonomic metagenome profilers with OPAL F Meyer, A Bremges, P Belmann, S Janssen, AC McHardy, D Koslicki Genome biology 20, 1-10, 2019 | 82 | 2019 |
| Creating a 3D microbial and chemical snapshot of a human habitat CA Kapono, JT Morton, A Bouslimani, AV Melnik, K Orlinsky, TL Knaan, ... Scientific Reports 8 (1), 3669, 2018 | 44 | 2018 |
| Shape based indexing for faster search of RNA family databases S Janssen, J Reeder, R Giegerich BMC bioinformatics 9 (1), 131, 2008 | 44 | 2008 |
| Lost in folding space? Comparing four variants of the thermodynamic model for RNA secondary structure prediction S Janssen, C Schudoma, G Steger, R Giegerich BMC bioinformatics 12 (1), 429, 2011 | 39 | 2011 |
Rob KnightWolfe Family Chair at Rady Children's; Director, Center for Microbiome Innovation; Professor, UCSD在 ucsd.edu 的电子邮件经过验证
