CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes DH Parks, M Imelfort, CT Skennerton, P Hugenholtz, GW Tyson Genome research 25 (7), 1043-1055, 2015 | 8096 | 2015 |
The khmer software package: enabling efficient nucleotide sequence analysis MR Crusoe, HF Alameldin, S Awad, E Boucher, A Caldwell, R Cartwright, ... F1000Research 4, 2015 | 366 | 2015 |
An expanded genomic representation of the phylum Cyanobacteria RM Soo, CT Skennerton, Y Sekiguchi, M Imelfort, SJ Paech, PG Dennis, ... Genome biology and evolution 6 (5), 1031-1045, 2014 | 296 | 2014 |
Crass: identification and reconstruction of CRISPR from unassembled metagenomic data CT Skennerton, M Imelfort, GW Tyson Nucleic acids research 41 (10), e105-e105, 2013 | 167 | 2013 |
Expanding our view of genomic diversity in Candidatus Accumulibacter clades CT Skennerton, JJ Barr, FR Slater, PL Bond, GW Tyson Environmental microbiology 17 (5), 1574-1585, 2015 | 123 | 2015 |
Phage encoded H-NS: a potential achilles heel in the bacterial defence system CT Skennerton, FE Angly, M Breitbart, L Bragg, S He, KD McMahon, ... PloS one 6 (5), e20095, 2011 | 102 | 2011 |
Methane-fueled syntrophy through extracellular electron transfer: uncovering the genomic traits conserved within diverse bacterial partners of anaerobic methanotrophic archaea CT Skennerton, K Chourey, R Iyer, RL Hettich, GW Tyson, VJ Orphan MBio 8 (4), 10.1128/mbio. 00530-17, 2017 | 88 | 2017 |
Phylogenomic analysis of Candidatus ‘Izimaplasma’ species: free-living representatives from a Tenericutes clade found in methane seeps CT Skennerton, MF Haroon, A Briegel, J Shi, GJ Jensen, GW Tyson, ... The ISME journal 10 (11), 2679-2692, 2016 | 86 | 2016 |
Comparative genomics reveals electron transfer and syntrophic mechanisms differentiating methanotrophic and methanogenic archaea GL Chadwick, CT Skennerton, R Laso-Pérez, AO Leu, DR Speth, H Yu, ... PLoS biology 20 (1), e3001508, 2022 | 78 | 2022 |
Metagenomic and metaproteomic analyses of Accumulibacter phosphatis‐enriched floccular and granular biofilm JJ Barr, BE Dutilh, CT Skennerton, T Fukushima, ML Hastie, JJ Gorman, ... Environmental microbiology 18 (1), 273-287, 2016 | 56 | 2016 |
Genomic Reconstruction of an Uncultured Hydrothermal Vent Gammaproteobacterial Methanotroph (Family Methylothermaceae) Indicates Multiple Adaptations to … CT Skennerton, LM Ward, A Michel, K Metcalfe, C Valiente, S Mullin, ... Frontiers in microbiology 6, 1425, 2015 | 54 | 2015 |
In-solution fluorescence in situ hybridization and fluorescence-activated cell sorting for single cell and population genome recovery MF Haroon, CT Skennerton, JA Steen, N Lachner, P Hugenholtz, ... Methods in enzymology 531, 3-19, 2013 | 43 | 2013 |
Comparative genomics and proteomic analysis of assimilatory sulfate reduction pathways in anaerobic methanotrophic archaea H Yu, D Susanti, SE McGlynn, CT Skennerton, K Chourey, R Iyer, ... Frontiers in microbiology 9, 2917, 2018 | 38 | 2018 |
Proteomic stable isotope probing reveals biosynthesis dynamics of slow growing methane based microbial communities JJ Marlow, CT Skennerton, Z Li, K Chourey, RL Hettich, C Pan, VJ Orphan Frontiers in microbiology 7, 563, 2016 | 27 | 2016 |
Sulfate differentially stimulates but is not respired by diverse anaerobic methanotrophic archaea H Yu, CT Skennerton, GL Chadwick, AO Leu, M Aoki, GW Tyson, ... The ISME Journal 16 (1), 168-177, 2022 | 24 | 2022 |
Increased circulating butyrate and ursodeoxycholate during probiotic intervention in humans with type 2 diabetes PJ McMurdie, MK Stoeva, N Justice, M Nemchek, CMK Sieber, S Tyagi, ... BMC microbiology 22 (1), 19, 2022 | 21 | 2022 |
Photosynthesis is not a universal feature of the phylum Cyanobacteria RM Soo, CT Skennerton, Y Sekiguchi, M Imelfort, SJ Paech, PG Dennis, ... PeerJ PrePrints 2, e204v1, 2014 | 6 | 2014 |
Physiological, genomic, and sulfur isotopic characterization of methanol metabolism by Desulfovibrio carbinolicus MS Sim, CT Skennerton, VJ Orphan Plos one 16 (1), e0245069, 2021 | 2 | 2021 |
Erratum for Skennerton et al.,“methane-fueled syntrophy through extracellular electron transfer: Uncovering the genomic traits conserved within diverse bacterial partners of … CT Skennerton, K Chourey, R Iyer, RL Hettich, GW Tyson, VJ Orphan MBio 8 (5), 10.1128/mbio. 01561-17, 2017 | 1 | 2017 |
Phage-host evolution in a model ecosystem C Skennerton | 1 | 2013 |