Modeling of protein–peptide interactions using the CABS-dock web server for binding site search and flexible docking M Blaszczyk, M Kurcinski, M Kouza, L Wieteska, A Debinski, A Kolinski, ... Methods 93, 72-83, 2016 | 171 | 2016 |
Effect of finite size on cooperativity and rates of protein folding M Kouza, MS Li, EP O'Brien, CK Hu, D Thirumalai The Journal of Physical Chemistry A 110 (2), 671-676, 2006 | 74 | 2006 |
The GOR method of protein secondary structure prediction and its application as a protein aggregation prediction tool M Kouza, E Faraggi, A Kolinski, A Kloczkowski Prediction of protein secondary structure, 7-24, 2017 | 66 | 2017 |
Modeling of protein structural flexibility and large-scale dynamics: Coarse-grained simulations and elastic network models S Kmiecik, M Kouza, AE Badaczewska-Dawid, A Kloczkowski, A Kolinski International journal of molecular sciences 19 (11), 3496, 2018 | 57 | 2018 |
Refolding upon force quench and pathways of mechanical and thermal unfolding of ubiquitin MS Li, M Kouza, CK Hu Biophysical journal 92 (2), 547-561, 2007 | 57 | 2007 |
Relationship between population of the fibril-prone conformation in the monomeric state and oligomer formation times of peptides: Insights from all-atom simulations HB Nam, M Kouza, H Zung, MS Li The Journal of chemical physics 132 (16), 2010 | 47 | 2010 |
New force replica exchange method and protein folding pathways probed by force-clamp technique M Kouza, CK Hu, MS Li The Journal of chemical physics 128 (4), 2008 | 39 | 2008 |
Dependence of protein mechanical unfolding pathways on pulling speeds MS Li, M Kouza The Journal of chemical physics 130 (14), 2009 | 38 | 2009 |
Oligomerization of FVFLM peptides and their ability to inhibit beta amyloid peptides aggregation: consideration as a possible model M Kouza, A Banerji, A Kolinski, IA Buhimschi, A Kloczkowski Physical Chemistry Chemical Physics 19 (4), 2990-2999, 2017 | 37 | 2017 |
Mechanical unfolding of acylphosphatase studied by single-molecule force spectroscopy and MD simulations G Arad-Haase, SG Chuartzman, S Dagan, R Nevo, M Kouza, BK Mai, ... Biophysical journal 99 (1), 238-247, 2010 | 36 | 2010 |
Folding of the protein domain hbSBD M Kouza, CF Chang, S Hayryan, T Yu, MS Li, T Huang, CK Hu Biophysical journal 89 (5), 3353-3361, 2005 | 35 | 2005 |
From coarse-grained to atomic-level characterization of protein dynamics: transition state for the folding of B domain of protein A S Kmiecik, D Gront, M Kouza, A Kolinski The Journal of Physical Chemistry B 116 (23), 7026-7032, 2012 | 33 | 2012 |
Protein mechanical unfolding: Importance of non-native interactions M Kouza, CK Hu, H Zung, MS Li The Journal of chemical physics 131 (21), 2009 | 30 | 2009 |
Combining coarse-grained protein models with replica-exchange all-atom molecular dynamics J Wabik, S Kmiecik, D Gront, M Kouza, A Koliński International Journal of Molecular Sciences 14 (5), 9893-9905, 2013 | 29 | 2013 |
Folding simulations of the A and B domains of protein G M Kouza, UHE Hansmann The Journal of Physical Chemistry B 116 (23), 6645-6653, 2012 | 27 | 2012 |
Role of resultant dipole moment in mechanical dissociation of biological complexes M Kouza, A Banerji, A Kolinski, I Buhimschi, A Kloczkowski Molecules 23 (8), 1995, 2018 | 24 | 2018 |
A structure-based model fails to probe the mechanical unfolding pathways of the titin I27 domain M Kouza, CK Hu, MS Li, A Kolinski The Journal of chemical physics 139 (6), 2013 | 24 | 2013 |
Velocity scaling for optimizing replica exchange molecular dynamics M Kouza, UHE Hansmann The Journal of Chemical Physics 134 (4), 2011 | 24 | 2011 |
Kinetics and mechanical stability of the fibril state control fibril formation time of polypeptide chains: A computational study M Kouza, NT Co, MS Li, S Kmiecik, A Kolinski, A Kloczkowski, ... The Journal of Chemical Physics 148 (21), 2018 | 21 | 2018 |
Preformed template fluctuations promote fibril formation: insights from lattice and all-atom models M Kouza, NT Co, PH Nguyen, A Kolinski, MS Li The Journal of Chemical Physics 142 (14), 2015 | 17 | 2015 |