标题/作者	年份
RNA based mNGS approach identifies a novel human coronavirus from two individual pneumonia cases in 2019 Wuhan outbreak L Chen, W Liu, Q Zhang, K Xu, G Ye, W Wu, Z Sun, F Liu, K Wu, B Zhong, ... Emerging microbes & infections 9 (1), 313-319	2020
Laboratory validation of a clinical metagenomic sequencing assay for pathogen detection in cerebrospinal fluid S Miller, SN Naccache, E Samayoa, K Messacar, S Arevalo, S Federman, ... Genome research 29 (5), 831-842	2019
Rapid pathogen detection by metagenomic next-generation sequencing of infected body fluids W Gu, X Deng, M Lee, YD Sucu, S Arevalo, D Stryke, S Federman, ... Nature medicine 27 (1), 115-124	2021
Genomic surveillance reveals multiple introductions of SARS-CoV-2 into Northern California X Deng, W Gu, S Federman, L Du Plessis, OG Pybus, NR Faria, C Wang, ... Science 369 (6503), 582-587	2020
Development and evaluation of a rapid CRISPR-based diagnostic for COVID-19 T Hou, W Zeng, M Yang, W Chen, L Ren, J Ai, J Wu, Y Liao, X Gou, Y Li, ... PLoS Pathogens 16 (8), e1008705	2020
Beyond diversity loss and climate change: Impacts of Amazon deforestation on infectious diseases and public health JH Ellwanger, B Kulmann-Leal, VL Kaminski, J Valverde-Villegas, ... Anais da Academia Brasileira de Ciências 92	2020
Third-generation sequencing in the clinical laboratory: exploring the advantages and challenges of nanopore sequencing LM Petersen, IW Martin, WE Moschetti, CM Kershaw, GJ Tsongalis Journal of clinical microbiology 58 (1), e01315-19	2019
New insights of emerging SARS-CoV-2: epidemiology, etiology, clinical features, clinical treatment, and prevention G Guo, L Ye, K Pan, Y Chen, D Xing, K Yan, Z Chen, N Ding, W Li, ... Frontiers in Cell and Developmental Biology 8, 410	2020
Prospects and challenges of implementing DNA metabarcoding for high-throughput insect surveillance AM Piper, J Batovska, NOI Cogan, J Weiss, JP Cunningham, BC Rodoni, ... GigaScience 8 (8), giz092	2019
mNGS in clinical microbiology laboratories: on the road to maturity D Han, Z Li, R Li, P Tan, R Zhang, J Li Critical reviews in microbiology 45 (5-6), 668-685	2019
IDseq—An open source cloud-based pipeline and analysis service for metagenomic pathogen detection and monitoring KL Kalantar, T Carvalho, CFA de Bourcy, B Dimitrov, G Dingle, R Egger, ... Gigascience 9 (10), giaa111	2020
Metagenomic next-generation sequencing for mixed pulmonary infection diagnosis J Wang, Y Han, J Feng BMC pulmonary medicine 19 (1), 1-8	2019
Genomic sequencing of SARS-CoV-2: a guide to implementation for maximum impact on public health, 8 January 2021 World Health Organization World Health Organization	2021
Point-counterpoint: should we be performing metagenomic next-generation sequencing for infectious disease diagnosis in the clinical laboratory? S Miller, C Chiu, KG Rodino, MB Miller Journal of clinical microbiology 58 (3), 10.1128/jcm. 01739-19	2020
Metagenomics for neurological infections—expanding our imagination PS Ramachandran, MR Wilson Nature Reviews Neurology 16 (10), 547-556	2020
COVID‐19 diagnostic testing: technology perspective M Xu, D Wang, H Wang, X Zhang, T Liang, J Dai, M Li, J Zhang, K Zhang, ... Clinical and translational medicine 10 (4), e158	2020
Metatranscriptomic characterization of coronavirus disease 2019 identified a host transcriptional classifier associated with immune signaling H Zhang, JW Ai, W Yang, X Zhou, F He, S Xie, W Zeng, Y Li, Y Yu, X Gou, ... Clinical Infectious Diseases 73 (3), 376-385	2021
High‐throughput metagenomics for identification of pathogens in the clinical settings N Li, Q Cai, Q Miao, Z Song, Y Fang, B Hu Small methods 5 (1), 2000792	2021
Recent trends in molecular diagnostics of yeast infections: from PCR to NGS T Gabaldón FEMS Microbiology Reviews 43 (5), 517-547	2019
Genetic and epigenetic studies in diabetic kidney disease HF Gu Frontiers in genetics 10, 507	2019

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