标题/作者	年份
g: Profiler: a web server for functional enrichment analysis and conversions of gene lists (2019 update) U Raudvere, L Kolberg, I Kuzmin, T Arak, P Adler, H Peterson, J Vilo Nucleic acids research 47 (W1), W191-W198	2019
Cytoscape automation: empowering workflow-based network analysis D Otasek, JH Morris, J Bouças, AR Pico, B Demchak Genome biology 20, 1-15	2019
Single-cell transcriptomic profiling of the aging mouse brain M Ximerakis, SL Lipnick, BT Innes, SK Simmons, X Adiconis, D Dionne, ... Nature neuroscience 22 (10), 1696-1708	2019
Pathway Commons 2019 Update: integration, analysis and exploration of pathway data I Rodchenkov, O Babur, A Luna, BA Aksoy, JV Wong, D Fong, M Franz, ... Nucleic acids research 48 (D1), D489-D497	2020
A clinically applicable integrative molecular classification of meningiomas F Nassiri, J Liu, V Patil, Y Mamatjan, JZ Wang, R Hugh-White, AM Macklin, ... Nature 597 (7874), 119-125	2021
A guide to conquer the biological network era using graph theory M Koutrouli, E Karatzas, D Paez-Espino, GA Pavlopoulos Frontiers in bioengineering and biotechnology 8, 34	2020
Promotion of cholangiocarcinoma growth by diverse cancer-associated fibroblast subpopulations S Affo, A Nair, F Brundu, A Ravichandra, S Bhattacharjee, M Matsuda, ... Cancer cell 39 (6), 866-882. e11	2021
Dual RNA-Seq of Mtb-infected macrophages in vivo reveals ontologically distinct host-pathogen interactions D Pisu, L Huang, JK Grenier, DG Russell Cell reports 30 (2), 335-350. e4	2020
RCy3: Network biology using Cytoscape from within R JA Gustavsen, S Pai, R Isserlin, B Demchak, AR Pico F1000Research 8	2019
Integrative pathway enrichment analysis of multivariate omics data M Paczkowska, J Barenboim, N Sintupisut, NS Fox, H Zhu, D Abd-Rabbo, ... Nature communications 11 (1), 735	2020
Spatial metabolomics and imaging mass spectrometry in the age of artificial intelligence T Alexandrov Annual review of biomedical data science 3, 61-87	2020
Transcriptional landscape of SARS-CoV-2 infection dismantles pathogenic pathways activated by the virus, proposes unique sex-specific differences and predicts tailored therapeutic strategies P Fagone, R Ciurleo, SD Lombardo, C Iacobello, CI Palermo, ... Autoimmunity reviews 19 (7), 102571	2020
Unravelling the proteomic landscape of extracellular vesicles in prostate cancer by density-based fractionation of urine B Dhondt, E Geeurickx, J Tulkens, J Van Deun, G Vergauwen, L Lippens, ... Journal of extracellular vesicles 9 (1), 1736935	2020
Fusobacterium nucleatum promotes metastasis in colorectal cancer by activating autophagy signaling via the upregulation of CARD3 expression Y Chen, Y Chen, J Zhang, P Cao, W Su, Y Deng, N Zhan, X Fu, Y Huang, ... Theranostics 10 (1), 323	2020
Role of the GLUT1 glucose transporter in postnatal CNS angiogenesis and blood-brain barrier integrity K Veys, Z Fan, M Ghobrial, A Bouché, M García-Caballero, K Vriens, ... Circulation research 127 (4), 466-482	2020
METTL1 overexpression is correlated with poor prognosis and promotes hepatocellular carcinoma via PTEN QH Tian, MF Zhang, JS Zeng, RG Luo, Y Wen, J Chen, LG Gan, JP Xiong Journal of Molecular Medicine 97, 1535-1545	2019
FoxO maintains a genuine muscle stem-cell quiescent state until geriatric age L Garcia-Prat, E Perdiguero, S Alonso-Martin, S Dell’Orso, ... Nature cell biology 22 (11), 1307-1318	2020
A four-chemokine signature is associated with a t-cell–inflamed phenotype in primary and metastatic pancreatic cancer JM Romero, B Grünwald, GH Jang, PP Bavi, A Jhaveri, M Masoomian, ... Clinical Cancer Research 26 (8), 1997-2010	2020
SOX9 drives the epithelial–mesenchymal transition in non-small-cell lung cancer through the Wnt/β-catenin pathway JQ Huang, FK Wei, XL Xu, SX Ye, JW Song, PK Ding, J Zhu, HF Li, ... Journal of translational medicine 17 (1), 1-13	2019
Mitochondrial functionality in male fertility: from spermatogenesis to fertilization YJ Park, MG Pang Antioxidants 10 (1), 98	2021

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