标题/作者	年份
Comprehensive integration of single-cell data T Stuart, A Butler, P Hoffman, C Hafemeister, E Papalexi, WM Mauck III, ... Cell 177 (7), 1888-1902. e21	2019
Dimensionality reduction for visualizing single-cell data using UMAP E Becht, L McInnes, J Healy, CA Dutertre, IWH Kwok, LG Ng, F Ginhoux, ... Nature biotechnology 37 (1), 38-44	2019
SARS-CoV-2 receptor ACE2 is an interferon-stimulated gene in human airway epithelial cells and is detected in specific cell subsets across tissues CGK Ziegler, SJ Allon, SK Nyquist, IM Mbano, VN Miao, CN Tzouanas, ... Cell 181 (5), 1016-1035. e19	2020
Normalization and variance stabilization of single-cell RNA-seq data using regularized negative binomial regression C Hafemeister, R Satija Genome biology 20 (1), 1-15	2019
Fast, sensitive and accurate integration of single-cell data with Harmony I Korsunsky, N Millard, J Fan, K Slowikowski, F Zhang, K Wei, ... Nature methods 16 (12), 1289-1296	2019
Integrated analysis of multimodal single-cell data Y Hao, S Hao, E Andersen-Nissen, WM Mauck III, S Zheng, A Butler, ... Cell 184 (13), 3573-3587. e29	2021
Bioinformatics AD Baxevanis, GD Bader, DS Wishart John Wiley & Sons	2020
Determining cell type abundance and expression from bulk tissues with digital cytometry AM Newman, CB Steen, CL Liu, AJ Gentles, AA Chaudhuri, F Scherer, ... Nature biotechnology 37 (7), 773-782	2019
Single-cell reconstruction of the early maternal–fetal interface in humans R Vento-Tormo, M Efremova, RA Botting, MY Turco, M Vento-Tormo, ... Nature 563 (7731), 347-353	2018
A single-cell atlas of the peripheral immune response in patients with severe COVID-19 AJ Wilk, A Rustagi, NQ Zhao, J Roque, GJ Martínez-Colón, JL McKechnie, ... Nature medicine 26 (7), 1070-1076	2020
Single-cell RNA sequencing of microglia throughout the mouse lifespan and in the injured brain reveals complex cell-state changes TR Hammond, C Dufort, L Dissing-Olesen, S Giera, A Young, A Wysoker, ... Immunity 50 (1), 253-271. e6	2019
Current best practices in single‐cell RNA‐seq analysis: a tutorial MD Luecken, FJ Theis Molecular systems biology 15 (6), e8746	2019
Conserved cell types with divergent features in human versus mouse cortex RD Hodge, TE Bakken, JA Miller, KA Smith, ER Barkan, LT Graybuck, ... Nature 573 (7772), 61-68	2019
Severe COVID-19 is marked by a dysregulated myeloid cell compartment J Schulte-Schrepping, N Reusch, D Paclik, K Baßler, S Schlickeiser, ... Cell 182 (6), 1419-1440. e23	2020
Integrative single-cell analysis T Stuart, R Satija Nature reviews genetics 20 (5), 257-272	2019
Guidelines for the use of flow cytometry and cell sorting in immunological studies A Cossarizza, HD Chang, A Radbruch, A Acs, D Adam, S Adam‐Klages, ... European journal of immunology 49 (10), 1457-1973	2019
Clonal replacement of tumor-specific T cells following PD-1 blockade KE Yost, AT Satpathy, DK Wells, Y Qi, C Wang, R Kageyama, ... Nature medicine 25 (8), 1251-1259	2019
A cancer cell program promotes T cell exclusion and resistance to checkpoint blockade L Jerby-Arnon, P Shah, MS Cuoco, C Rodman, MJ Su, JC Melms, ... Cell 175 (4), 984-997. e24	2018
The protein expression profile of ACE2 in human tissues F Hikmet, L Méar, Å Edvinsson, P Micke, M Uhlén, C Lindskog Molecular systems biology 16 (7), e9610	2020
DoubletFinder: doublet detection in single-cell RNA sequencing data using artificial nearest neighbors CS McGinnis, LM Murrow, ZJ Gartner Cell systems 8 (4), 329-337. e4	2019

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