标题/作者	年份
CARD 2020: antibiotic resistome surveillance with the comprehensive antibiotic resistance database BP Alcock, AR Raphenya, TTY Lau, KK Tsang, M Bouchard, ... Nucleic acids research 48 (D1), D517-D525	2020
Database resources of the national center for biotechnology information EW Sayers, J Beck, EE Bolton, D Bourexis, JR Brister, K Canese, ... Nucleic acids research 49 (D1), D10	2021
GLASS whole-genome sequencing for surveillance of antimicrobial resistance World Health Organization World Health Organization	2020
The PATRIC Bioinformatics Resource Center: expanding data and analysis capabilities JJ Davis, AR Wattam, RK Aziz, T Brettin, R Butler, RM Butler, P Chlenski, ... Nucleic acids research 48 (D1), D606-D612	2020
AMRFinderPlus and the Reference Gene Catalog facilitate examination of the genomic links among antimicrobial resistance, stress response, and virulence M Feldgarden, V Brover, N Gonzalez-Escalona, JG Frye, J Haendiges, ... Scientific reports 11 (1), 12728	2021
An omics-based framework for assessing the health risk of antimicrobial resistance genes AN Zhang, JM Gaston, CL Dai, S Zhao, M Poyet, M Groussin, X Yin, LG Li, ... Nature communications 12 (1), 4765	2021
Metagenomic compendium of 189,680 DNA viruses from the human gut microbiome S Nayfach, D Páez-Espino, L Call, SJ Low, H Sberro, NN Ivanova, ... Nature microbiology 6 (7), 960-970	2021
Characterization of antimicrobial-resistant Gram-negative bacteria that cause neonatal sepsis in seven low-and middle-income countries K Sands, MJ Carvalho, E Portal, K Thomson, C Dyer, C Akpulu, ... Nature microbiology 6 (4), 512-523	2021
Standardized bacteriophage purification for personalized phage therapy T Luong, AC Salabarria, RA Edwards, DR Roach Nature Protocols 15 (9), 2867-2890	2020
Typing methods based on whole genome sequencing data L Uelze, J Grützke, M Borowiak, JA Hammerl, K Juraschek, C Deneke, ... One Health Outlook 2, 1-19	2020
Targeted suppression of human IBD-associated gut microbiota commensals by phage consortia for treatment of intestinal inflammation S Federici, S Kredo-Russo, R Valdés-Mas, D Kviatcovsky, E Weinstock, ... Cell 185 (16), 2879-2898. e24	2022
Bakta: rapid and standardized annotation of bacterial genomes via alignment-free sequence identification O Schwengers, L Jelonek, MA Dieckmann, S Beyvers, J Blom, ... Microbial genomics 7 (11)	2021
Discordant bioinformatic predictions of antimicrobial resistance from whole-genome sequencing data of bacterial isolates: an inter-laboratory study RM Doyle, DM O'sullivan, SD Aller, S Bruchmann, T Clark, AC Pelegrin, ... Microbial genomics 6 (2)	2020
The mcr-9 gene of Salmonella and Escherichia coli is not associated with colistin resistance in the United States GH Tyson, C Li, CH Hsu, S Ayers, S Borenstein, S Mukherjee, TT Tran, ... Antimicrobial Agents and Chemotherapy 64 (8), 10.1128/aac. 00573-20	2020
CeMbio-The Caenorhabditis elegans microbiome resource P Dirksen, A Assié, J Zimmermann, F Zhang, AM Tietje, SA Marsh, ... G3: Genes, Genomes, Genetics 10 (9), 3025-3039	2020
Mobile oxazolidinone resistance genes in Gram-positive and Gram-negative bacteria S Schwarz, W Zhang, XD Du, H Krüger, AT Feßler, S Ma, Y Zhu, C Wu, ... Clinical Microbiology Reviews 34 (3), 10.1128/cmr. 00188-20	2021
Clinical outcomes and bacterial characteristics of carbapenem-resistant Klebsiella pneumoniae complex among patients from different global regions (CRACKLE-2): a prospective, multicentre, cohort study M Wang, M Earley, L Chen, BM Hanson, Y Yu, Z Liu, S Salcedo, E Cober, ... The Lancet Infectious Diseases 22 (3), 401-412	2022
Large-scale assessment of antimicrobial resistance marker databases for genetic phenotype prediction: a systematic review N Mahfouz, I Ferreira, S Beisken, A von Haeseler, AE Posch Journal of Antimicrobial Chemotherapy 75 (11), 3099-3108	2020
PathoFact: a pipeline for the prediction of virulence factors and antimicrobial resistance genes in metagenomic data L de Nies, S Lopes, SB Busi, V Galata, A Heintz-Buschart, CC Laczny, ... Microbiome 9, 1-14	2021
Emerging applications of machine learning in food safety X Deng, S Cao, AL Horn Annual Review of Food Science and Technology 12, 513-538	2021

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