CellMiner: a web-based suite of genomic and pharmacologic tools to explore transcript and drug patterns in the NCI-60 cell line set WC Reinhold, M Sunshine, H Liu, S Varma, KW Kohn, J Morris, ... Cancer research 72 (14), 3499-3511, 2012 | 634 | 2012 |
Clinical information extraction applications: a literature review Y Wang, L Wang, M Rastegar-Mojarad, S Moon, F Shen, N Afzal, S Liu, ... Journal of biomedical informatics 77, 34-49, 2018 | 610 | 2018 |
Overview of BioCreative II gene mention recognition L Smith, LK Tanabe, CJ Kuo, I Chung, CN Hsu, YS Lin, R Klinger, ... Genome biology 9 (2), 1-19, 2008 | 448 | 2008 |
Overview of BioCreative II gene normalization AA Morgan, Z Lu, X Wang, AM Cohen, J Fluck, P Ruch, A Divoli, K Fundel, ... Genome biology 9, 1-19, 2008 | 399 | 2008 |
A comparison of word embeddings for the biomedical natural language processing Y Wang, S Liu, N Afzal, M Rastegar-Mojarad, L Wang, F Shen, ... Journal of biomedical informatics 87, 12-20, 2018 | 345 | 2018 |
CLAMP–a toolkit for efficiently building customized clinical natural language processing pipelines E Soysal, J Wang, M Jiang, Y Wu, S Pakhomov, H Liu, H Xu Journal of the American Medical Informatics Association 25 (3), 331-336, 2018 | 309 | 2018 |
The CHEMDNER corpus of chemicals and drugs and its annotation principles M Krallinger, O Rabal, F Leitner, M Vazquez, D Salgado, Z Lu, R Leaman, ... Journal of cheminformatics 7 (1), 1-17, 2015 | 266 | 2015 |
Building effective defect-prediction models in practice AG Koru, H Liu IEEE software 22 (6), 23-29, 2005 | 230 | 2005 |
Validating drug repurposing signals using electronic health records: a case study of metformin associated with reduced cancer mortality H Xu, MC Aldrich, Q Chen, H Liu, NB Peterson, Q Dai, M Levy, A Shah, ... Journal of the American Medical Informatics Association 22 (1), 179-191, 2015 | 226 | 2015 |
Gene name ambiguity of eukaryotic nomenclatures L Chen, H Liu, C Friedman Bioinformatics 21 (2), 248-256, 2005 | 194 | 2005 |
An investigation into the functional form of the size-defect relationship for software modules AG Koru, D Zhang, K El Emam, H Liu IEEE Transactions on Software Engineering 35 (2), 293-304, 2008 | 181 | 2008 |
Automatic resolution of ambiguous terms based on machine learning and conceptual relations in the UMLS H Liu, SB Johnson, C Friedman Journal of the American Medical Informatics Association 9 (6), 621-636, 2002 | 167 | 2002 |
An information extraction framework for cohort identification using electronic health records H Liu, SJ Bielinski, S Sohn, S Murphy, KB Wagholikar, SR Jonnalagadda, ... AMIA Summits on Translational Science Proceedings 2013, 149, 2013 | 165 | 2013 |
Representing information in patient reports using natural language processing and the extensible markup language C Friedman, G Hripcsak, L Shagina, H Liu Journal of the American Medical Informatics Association 6 (1), 76-87, 1999 | 165 | 1999 |
The gene normalization task in BioCreative III Z Lu, HY Kao, CH Wei, M Huang, J Liu, CJ Kuo, CN Hsu, RTH Tsai, ... BMC bioinformatics 12, 1-19, 2011 | 163 | 2011 |
mRNA and microRNA Expression Profiles of the NCI-60 Integrated with Drug ActivitiesAgilent mRNA and microRNA Profiling in NCI-60 H Liu, P D'Andrade, S Fulmer-Smentek, P Lorenzi, KW Kohn, ... Molecular cancer therapeutics 9 (5), 1080-1091, 2010 | 157 | 2010 |
Framework for a protein ontology DA Natale, CN Arighi, WC Barker, J Blake, TC Chang, Z Hu, H Liu, ... BMC bioinformatics 8, 1-12, 2007 | 157 | 2007 |
Using machine learning for concept extraction on clinical documents from multiple data sources M Torii, K Wagholikar, H Liu Journal of the American Medical Informatics Association 18 (5), 580-587, 2011 | 155 | 2011 |
Deep learning and alternative learning strategies for retrospective real-world clinical data D Chen, S Liu, P Kingsbury, S Sohn, CB Storlie, EB Habermann, ... NPJ digital medicine 2 (1), 43, 2019 | 153 | 2019 |
A clinical text classification paradigm using weak supervision and deep representation Y Wang, S Sohn, S Liu, F Shen, L Wang, EJ Atkinson, S Amin, H Liu BMC medical informatics and decision making 19, 1-13, 2019 | 148 | 2019 |