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Ajay N. Jain
Ajay N. Jain
Professor of Bioengineering, University of California San Francisco
在 jainlab.org 的电子邮件经过验证
标题
引用次数
引用次数
年份
Surflex: fully automatic flexible molecular docking using a molecular similarity-based search engine
AN Jain
Journal of medicinal chemistry 46 (4), 499-511, 2003
15732003
Genomic and transcriptional aberrations linked to breast cancer pathophysiologies
K Chin, S DeVries, J Fridlyand, PT Spellman, R Roydasgupta, WL Kuo, ...
Cancer cell 10 (6), 529-541, 2006
14912006
Assembly of microarrays for genome-wide measurement of DNA copy number
AM Snijders, N Nowak, R Segraves, S Blackwood, N Brown, J Conroy, ...
Nature genetics 29 (3), 263-264, 2001
12342001
Determinants of BRAF mutations in primary melanomas
JL Maldonado, J Fridlyand, H Patel, AN Jain, K Busam, T Kageshita, ...
Journal of the National Cancer Institute 95 (24), 1878-1890, 2003
8192003
Scoring noncovalent protein-ligand interactions: a continuous differentiable function tuned to compute binding affinities
AN Jain
Journal of computer-aided molecular design 10, 427-440, 1996
7161996
Surflex-Dock 2.1: robust performance from ligand energetic modeling, ring flexibility, and knowledge-based search
AN Jain
Journal of computer-aided molecular design 21, 281-306, 2007
6652007
Hammerhead: fast, fully automated docking of flexible ligands to protein binding sites
W Welch, J Ruppert, AN Jain
Chemistry & biology 3 (6), 449-462, 1996
4921996
Hidden Markov models approach to the analysis of array CGH data
J Fridlyand, AM Snijders, D Pinkel, DG Albertson, AN Jain
Journal of multivariate analysis 90 (1), 132-153, 2004
4682004
Fully automatic quantification of microarray image data
AN Jain, TA Tokuyasu, AM Snijders, R Segraves, DG Albertson, D Pinkel
Genome research 12 (2), 325-332, 2002
4592002
Recommendations for evaluation of computational methods
AN Jain, A Nicholls
Journal of computer-aided molecular design 22, 133-139, 2008
4202008
Breast tumor copy number aberration phenotypes and genomic instability
J Fridlyand, AM Snijders, B Ylstra, H Li, A Olshen, R Segraves, S Dairkee, ...
BMC cancer 6, 1-13, 2006
3642006
Scoring functions for protein-ligand docking
AN Jain
Current Protein and Peptide Science 7 (5), 407-420, 2006
3422006
Molecular shape and medicinal chemistry: a perspective
A Nicholls, GB McGaughey, RP Sheridan, AC Good, G Warren, M Mathieu, ...
Journal of medicinal chemistry 53 (10), 3862-3886, 2010
3272010
Array-based comparative genomic hybridization for genome-wide screening of DNA copy number in bladder tumors
JA Veltman, J Fridlyand, S Pejavar, AB Olshen, JE Korkola, S DeVries, ...
Cancer research 63 (11), 2872-2880, 2003
3112003
Genomic copy number analysis of non-small cell lung cancer using array comparative genomic hybridization: implications of the phosphatidylinositol 3-kinase pathway
PP Massion, WL Kuo, D Stokoe, AB Olshen, PA Treseler, K Chin, C Chen, ...
Cancer research 62 (13), 3636-3640, 2002
2832002
Surflex-Dock: Docking benchmarks and real-world application
R Spitzer, AN Jain
Journal of computer-aided molecular design 26, 687-699, 2012
2792012
Automatic identification and representation of protein binding sites for molecular docking
J Ruppert, W Welch, AN Jain
Protein Science 6 (3), 524-533, 1997
2571997
Compass: predicting biological activities from molecular surface properties. Performance comparisons on a steroid benchmark
AN Jain, K Koile, D Chapman
Journal of Medicinal Chemistry 37 (15), 2315-2327, 1994
2551994
High-resolution analysis of DNA copy number alterations in colorectal cancer by array-based comparative genomic hybridization
K Nakao, KR Mehta, J Fridlyand, DH Moore, AN Jain, A Lafuente, ...
Carcinogenesis 25 (8), 1345-1357, 2004
2482004
Ligand-based structural hypotheses for virtual screening
AN Jain
Journal of medicinal chemistry 47 (4), 947-961, 2004
2382004
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