Surflex: fully automatic flexible molecular docking using a molecular similarity-based search engine AN Jain Journal of medicinal chemistry 46 (4), 499-511, 2003 | 1573 | 2003 |
Genomic and transcriptional aberrations linked to breast cancer pathophysiologies K Chin, S DeVries, J Fridlyand, PT Spellman, R Roydasgupta, WL Kuo, ... Cancer cell 10 (6), 529-541, 2006 | 1491 | 2006 |
Assembly of microarrays for genome-wide measurement of DNA copy number AM Snijders, N Nowak, R Segraves, S Blackwood, N Brown, J Conroy, ... Nature genetics 29 (3), 263-264, 2001 | 1234 | 2001 |
Determinants of BRAF mutations in primary melanomas JL Maldonado, J Fridlyand, H Patel, AN Jain, K Busam, T Kageshita, ... Journal of the National Cancer Institute 95 (24), 1878-1890, 2003 | 819 | 2003 |
Scoring noncovalent protein-ligand interactions: a continuous differentiable function tuned to compute binding affinities AN Jain Journal of computer-aided molecular design 10, 427-440, 1996 | 716 | 1996 |
Surflex-Dock 2.1: robust performance from ligand energetic modeling, ring flexibility, and knowledge-based search AN Jain Journal of computer-aided molecular design 21, 281-306, 2007 | 665 | 2007 |
Hammerhead: fast, fully automated docking of flexible ligands to protein binding sites W Welch, J Ruppert, AN Jain Chemistry & biology 3 (6), 449-462, 1996 | 492 | 1996 |
Hidden Markov models approach to the analysis of array CGH data J Fridlyand, AM Snijders, D Pinkel, DG Albertson, AN Jain Journal of multivariate analysis 90 (1), 132-153, 2004 | 468 | 2004 |
Fully automatic quantification of microarray image data AN Jain, TA Tokuyasu, AM Snijders, R Segraves, DG Albertson, D Pinkel Genome research 12 (2), 325-332, 2002 | 459 | 2002 |
Recommendations for evaluation of computational methods AN Jain, A Nicholls Journal of computer-aided molecular design 22, 133-139, 2008 | 420 | 2008 |
Breast tumor copy number aberration phenotypes and genomic instability J Fridlyand, AM Snijders, B Ylstra, H Li, A Olshen, R Segraves, S Dairkee, ... BMC cancer 6, 1-13, 2006 | 364 | 2006 |
Scoring functions for protein-ligand docking AN Jain Current Protein and Peptide Science 7 (5), 407-420, 2006 | 342 | 2006 |
Molecular shape and medicinal chemistry: a perspective A Nicholls, GB McGaughey, RP Sheridan, AC Good, G Warren, M Mathieu, ... Journal of medicinal chemistry 53 (10), 3862-3886, 2010 | 327 | 2010 |
Array-based comparative genomic hybridization for genome-wide screening of DNA copy number in bladder tumors JA Veltman, J Fridlyand, S Pejavar, AB Olshen, JE Korkola, S DeVries, ... Cancer research 63 (11), 2872-2880, 2003 | 311 | 2003 |
Genomic copy number analysis of non-small cell lung cancer using array comparative genomic hybridization: implications of the phosphatidylinositol 3-kinase pathway PP Massion, WL Kuo, D Stokoe, AB Olshen, PA Treseler, K Chin, C Chen, ... Cancer research 62 (13), 3636-3640, 2002 | 283 | 2002 |
Surflex-Dock: Docking benchmarks and real-world application R Spitzer, AN Jain Journal of computer-aided molecular design 26, 687-699, 2012 | 279 | 2012 |
Automatic identification and representation of protein binding sites for molecular docking J Ruppert, W Welch, AN Jain Protein Science 6 (3), 524-533, 1997 | 257 | 1997 |
Compass: predicting biological activities from molecular surface properties. Performance comparisons on a steroid benchmark AN Jain, K Koile, D Chapman Journal of Medicinal Chemistry 37 (15), 2315-2327, 1994 | 255 | 1994 |
High-resolution analysis of DNA copy number alterations in colorectal cancer by array-based comparative genomic hybridization K Nakao, KR Mehta, J Fridlyand, DH Moore, AN Jain, A Lafuente, ... Carcinogenesis 25 (8), 1345-1357, 2004 | 248 | 2004 |
Ligand-based structural hypotheses for virtual screening AN Jain Journal of medicinal chemistry 47 (4), 947-961, 2004 | 238 | 2004 |