Ligand‐Based Virtual Screening

H Koeppen, J Kriegl, U Lessel… - Virtual screening …, 2011 - Wiley Online Library
Virtual screening is a computational approach for the knowledge-based identification of
compounds with a defined biological activity. In contrast to high-throughput screening (HTS) …

Comparative evaluation of 3D virtual ligand screening methods: impact of the molecular alignment on enrichment

D Giganti, H Guillemain, JL Spadoni… - Journal of chemical …, 2010 - ACS Publications
In the early stage of drug discovery programs, when the structure of a complex involving a
target and a small molecule is available, structure-based virtual ligand screening methods …

A review of ligand-based virtual screening web tools and screening algorithms in large molecular databases in the age of big data

AJ Banegas-Luna, JP Cerón-Carrasco… - Future medicinal …, 2018 - Taylor & Francis
Virtual screening has become a widely used technique for helping in drug discovery
processes. The key to this success is its ability to aid in the identification of novel bioactive …

A discussion of measures of enrichment in virtual screening: comparing the information content of descriptors with increasing levels of sophistication

A Bender, RC Glen - Journal of chemical information and …, 2005 - ACS Publications
We have performed virtual screening using some very simple features, by employing the
number of atoms per element as molecular descriptors but without regard to any structural …

POT-DMC: a virtual screening method for the identification of potent hits

JW Godden, FL Stahura, J Bajorath - Journal of medicinal …, 2004 - ACS Publications
A method for ligand-based virtual screening (LBVS), dynamic mapping of consensus
positions (DMC), has been extended to take different potency levels of template compounds …

Open-source platform to benchmark fingerprints for ligand-based virtual screening

S Riniker, GA Landrum - Journal of cheminformatics, 2013 - Springer
Similarity-search methods using molecular fingerprints are an important tool for ligand-
based virtual screening. A huge variety of fingerprints exist and their performance, usually …

Consensus scoring with feature selection for structure-based virtual screening

R Teramoto, H Fukunishi - Journal of chemical information and …, 2008 - ACS Publications
The evaluation of ligand conformations is a crucial aspect of structure-based virtual
screening, and scoring functions play significant roles in it. While consensus scoring (CS) …

Contact-based ligand-clustering approach for the identification of active compounds in virtual screening

AB Mantsyzov, G Bouvier… - … and Applications in …, 2012 - Taylor & Francis
Evaluation of docking results is one of the most important problems for virtual screening and
in silico drug design. Modern approaches for the identification of active compounds in a …

Towards improving compound selection in structure-based virtual screening

B Waszkowycz - Drug discovery today, 2008 - Elsevier
Structure-based virtual screening is now an established technology for supporting hit finding
and lead optimisation in drug discovery. Recent validation studies have highlighted the poor …

Virtual screening methods that complement HTS

FL Stahura, J Bajorath - Combinatorial chemistry & high …, 2004 - ingentaconnect.com
In this review, we discuss a number of computational methods that have been developed or
adapted for molecule classification and virtual screening (VS) of compound databases. In …