[HTML][HTML] When drug discovery meets web search: Learning to Rank for ligand-based virtual screening

W Zhang, L Ji, Y Chen, K Tang, H Wang, R Zhu… - Journal of …, 2015 - Springer
Background The rapid increase in the emergence of novel chemical substances presents a
substantial demands for more sophisticated computational methodologies for drug …

Automatic clustering of docking poses in virtual screening process using self-organizing map

G Bouvier, N Evrard-Todeschi, JP Girault… - …, 2010 - academic.oup.com
Motivation: Scoring functions provided by the docking software are still a major limiting factor
in virtual screening (VS) process to classify compounds. Score analysis of the docking is not …

[引用][C] Scaffold‐hopping potential of ligand‐based similarity concepts

S Renner, G Schneider - ChemMedChem: Chemistry Enabling …, 2006 - Wiley Online Library
Manipulating living systems at the molecular level requires a profound knowledge of the
variability of small-molecule effectors that provoke a particular cellular response. Medicinal …

Binding estimation after refinement, a new automated procedure for the refinement and rescoring of docked ligands in virtual screening

G Rastelli, G Degliesposti, A Del Rio… - Chemical biology & …, 2009 - Wiley Online Library
Binding estimation after refinement (BEAR) is a novel automated computational procedure
suitable for correcting and overcoming limitations of docking procedures such as poor …

Virtual screening: a fast tool for drug design

V Vyas, A Jain, A Jain, A Gupta - Scientia Pharmaceutica, 2008 - mdpi.com
Computational screening of databases has become increasingly popular in the
pharmaceutical research. Virtual screening uses computer based methods to discover new …

The reduced graph descriptor in virtual screening and data-driven clustering of high-throughput screening data

G Harper, GS Bravi, SD Pickett, J Hussain… - Journal of chemical …, 2004 - ACS Publications
Virtual screening and high-throughput screening are two major components of lead
discovery within the pharmaceutical industry. In this paper we describe improvements to …

Virtual screening in drug discovery-a computational perspective

AS Reddy, SP Pati, PP Kumar… - Current Protein and …, 2007 - ingentaconnect.com
Virtual screening emerged as an important tool in our quest to access novel drug like
compounds. There are a wide range of comparable and contrasting methodological …

Consensus scoring criteria for improving enrichment in virtual screening

JM Yang, YF Chen, TW Shen, BS Kristal… - Journal of chemical …, 2005 - ACS Publications
Motivation: Virtual screening of molecular compound libraries is a potentially powerful and
inexpensive method for the discovery of novel lead compounds for drug development. The …

Theoretical and practical considerations in virtual screening: a beaten field?

M Kontoyianni, P Madhav, E Suchanek… - Current medicinal …, 2008 - ingentaconnect.com
In this review, several aspects of virtual screening are presented. Although, docking and
scoring have been the most widely employed techniques, ligand-based virtual screening …

Structure-based virtual screening protocols.

A Good - Current opinion in drug discovery & development, 2001 - europepmc.org
Virtual screening techniques continue to play an important role within the pharmaceutical
industry lead discovery process. A core element of these technologies encompasses the …