Ligand-based virtual screening using bayesian networks
A Bayesian inference network (BIN) provides an interesting alternative to existing tools for
similarity-based virtual screening. The BIN is particularly effective when the active molecules …
similarity-based virtual screening. The BIN is particularly effective when the active molecules …
New fragment weighting scheme for the bayesian inference network in ligand-based virtual screening
A Abdo, N Salim - Journal of chemical information and modeling, 2011 - ACS Publications
Many of the conventional similarity methods assume that molecular fragments that do not
relate to biological activity carry the same weight as the important ones. One possible …
relate to biological activity carry the same weight as the important ones. One possible …
Implementing relevance feedback in ligand-based virtual screening using Bayesian inference network
Recently, the use of the Bayesian network as an alternative to existing tools for similarity-
based virtual screening has received noticeable attention from researchers in the …
based virtual screening has received noticeable attention from researchers in the …
Ligand‐Based Virtual Screening Using Bayesian Inference Network and Reweighted Fragments
Many of the similarity‐based virtual screening approaches assume that molecular fragments
that are not related to the biological activity carry the same weight as the important ones …
that are not related to the biological activity carry the same weight as the important ones …
Similarity‐based virtual screening with a Bayesian inference network
A Abdo, N Salim - ChemMedChem: Chemistry Enabling Drug …, 2009 - Wiley Online Library
An inference network model for molecular similarity searching: The similarity search problem
is modeled using inference or evidential reasoning under uncertainty. The inference network …
is modeled using inference or evidential reasoning under uncertainty. The inference network …
[HTML][HTML] Multiple search methods for similarity-based virtual screening: analysis of search overlap and precision
Background Data fusion methods are widely used in virtual screening, and make the implicit
assumption that the more often a molecule is retrieved in multiple similarity searches, the …
assumption that the more often a molecule is retrieved in multiple similarity searches, the …
Critical comparison of virtual screening methods against the MUV data set
P Tiikkainen, P Markt, G Wolber… - Journal of chemical …, 2009 - ACS Publications
In the current work, we measure the performance of seven ligand-based virtual screening
tools-five similarity search methods and two pharmacophore elucidators-against the MUV …
tools-five similarity search methods and two pharmacophore elucidators-against the MUV …
[HTML][HTML] Condorcet and borda count fusion method for ligand-based virtual screening
Background It is known that any individual similarity measure will not always give the best
recall of active molecule structure for all types of activity classes. Recently, the effectiveness …
recall of active molecule structure for all types of activity classes. Recently, the effectiveness …
Conditional probability: a new fusion method for merging disparate virtual screening results
JW Raymond, M Jalaie, MP Bradley - Journal of chemical …, 2004 - ACS Publications
This paper introduces a new consensus scoring approach for merging the results of different
virtual screening methods based on conditional probabilities. The technique is …
virtual screening methods based on conditional probabilities. The technique is …
[HTML][HTML] Virtual screening applications: a study of ligand-based methods and different structure representations in four different scenarios
DP Hristozov, TI Oprea, J Gasteiger - Journal of computer-aided molecular …, 2007 - Springer
Four different ligand-based virtual screening scenarios are studied:(1) prioritizing
compounds for subsequent high-throughput screening (HTS);(2) selecting a predefined …
compounds for subsequent high-throughput screening (HTS);(2) selecting a predefined …