Conditional probability: a new fusion method for merging disparate virtual screening results

JW Raymond, M Jalaie, MP Bradley - Journal of chemical …, 2004 - ACS Publications
This paper introduces a new consensus scoring approach for merging the results of different
virtual screening methods based on conditional probabilities. The technique is …

Consensus queries in ligand-based virtual screening experiments

F Berenger, O Vu, J Meiler - Journal of cheminformatics, 2017 - Springer
Background In ligand-based virtual screening experiments, a known active ligand is used in
similarity searches to find putative active compounds for the same protein target. When there …

Consensus scoring criteria for improving enrichment in virtual screening

JM Yang, YF Chen, TW Shen, BS Kristal… - Journal of chemical …, 2005 - ACS Publications
Motivation: Virtual screening of molecular compound libraries is a potentially powerful and
inexpensive method for the discovery of novel lead compounds for drug development. The …

Combination of similarity rankings using data fusion

P Willett - Journal of chemical information and modeling, 2013 - ACS Publications
Similarity searching is one of the most common techniques for ligand-based virtual
screening and involves scanning a chemical database to identify those molecules that are …

Condorcet and borda count fusion method for ligand-based virtual screening

A Ahmed, F Saeed, N Salim, A Abdo - Journal of cheminformatics, 2014 - Springer
Background It is known that any individual similarity measure will not always give the best
recall of active molecule structure for all types of activity classes. Recently, the effectiveness …

Virtual screening data fusion using both structure-and ligand-based methods

F Svensson, A Karlén, C Sköld - Journal of chemical information …, 2012 - ACS Publications
Virtual screening is widely applied in drug discovery, and significant effort has been put into
improving current methods. In this study, we have evaluated the performance of compound …

Evaluation of different machine learning methods for ligand-based virtual screening

R Kurczab, S Smusz, AJ Bojarski - Journal of Cheminformatics, 2011 - Springer
In silico High Throughput Screening of large compound databases has become increasingly
popular technology of finding valuable drug candidates, by applying a wide range of …

Multiple search methods for similarity-based virtual screening: analysis of search overlap and precision

JD Holliday, E Kanoulas, N Malim, P Willett - Journal of cheminformatics, 2011 - Springer
Background Data fusion methods are widely used in virtual screening, and make the implicit
assumption that the more often a molecule is retrieved in multiple similarity searches, the …

Application of the weighted Power-Weakness Ratio (wPWR) as a fusion rule in ligand-based virtual screening

M Cassotti, F Grisoni, S Nembri, R Todeschini - Match, 2016 - boa.unimib.it
Similarity searching, a technique used for ligand-based virtual screening in drug discovery,
exploits the structural information of known active compounds to find new ones with the …

REPROVIS-DB: a benchmark system for ligand-based virtual screening derived from reproducible prospective applications

P Ripphausen, AM Wassermann… - Journal of chemical …, 2011 - ACS Publications
Benchmark calculations are essential for the evaluation of virtual screening (VS) methods.
Typically, classes of known active compounds taken from the medicinal chemistry literature …