Conditional probability: a new fusion method for merging disparate virtual screening results
JW Raymond, M Jalaie, MP Bradley - Journal of chemical …, 2004 - ACS Publications
This paper introduces a new consensus scoring approach for merging the results of different
virtual screening methods based on conditional probabilities. The technique is …
virtual screening methods based on conditional probabilities. The technique is …
Consensus queries in ligand-based virtual screening experiments
Background In ligand-based virtual screening experiments, a known active ligand is used in
similarity searches to find putative active compounds for the same protein target. When there …
similarity searches to find putative active compounds for the same protein target. When there …
Consensus scoring criteria for improving enrichment in virtual screening
JM Yang, YF Chen, TW Shen, BS Kristal… - Journal of chemical …, 2005 - ACS Publications
Motivation: Virtual screening of molecular compound libraries is a potentially powerful and
inexpensive method for the discovery of novel lead compounds for drug development. The …
inexpensive method for the discovery of novel lead compounds for drug development. The …
Combination of similarity rankings using data fusion
P Willett - Journal of chemical information and modeling, 2013 - ACS Publications
Similarity searching is one of the most common techniques for ligand-based virtual
screening and involves scanning a chemical database to identify those molecules that are …
screening and involves scanning a chemical database to identify those molecules that are …
Condorcet and borda count fusion method for ligand-based virtual screening
Background It is known that any individual similarity measure will not always give the best
recall of active molecule structure for all types of activity classes. Recently, the effectiveness …
recall of active molecule structure for all types of activity classes. Recently, the effectiveness …
Virtual screening data fusion using both structure-and ligand-based methods
F Svensson, A Karlén, C Sköld - Journal of chemical information …, 2012 - ACS Publications
Virtual screening is widely applied in drug discovery, and significant effort has been put into
improving current methods. In this study, we have evaluated the performance of compound …
improving current methods. In this study, we have evaluated the performance of compound …
Evaluation of different machine learning methods for ligand-based virtual screening
In silico High Throughput Screening of large compound databases has become increasingly
popular technology of finding valuable drug candidates, by applying a wide range of …
popular technology of finding valuable drug candidates, by applying a wide range of …
Multiple search methods for similarity-based virtual screening: analysis of search overlap and precision
Background Data fusion methods are widely used in virtual screening, and make the implicit
assumption that the more often a molecule is retrieved in multiple similarity searches, the …
assumption that the more often a molecule is retrieved in multiple similarity searches, the …
Application of the weighted Power-Weakness Ratio (wPWR) as a fusion rule in ligand-based virtual screening
Similarity searching, a technique used for ligand-based virtual screening in drug discovery,
exploits the structural information of known active compounds to find new ones with the …
exploits the structural information of known active compounds to find new ones with the …
REPROVIS-DB: a benchmark system for ligand-based virtual screening derived from reproducible prospective applications
P Ripphausen, AM Wassermann… - Journal of chemical …, 2011 - ACS Publications
Benchmark calculations are essential for the evaluation of virtual screening (VS) methods.
Typically, classes of known active compounds taken from the medicinal chemistry literature …
Typically, classes of known active compounds taken from the medicinal chemistry literature …