Evaluation of different machine learning methods for ligand-based virtual screening

R Kurczab, S Smusz, AJ Bojarski - Journal of Cheminformatics, 2011 - Springer
In silico High Throughput Screening of large compound databases has become increasingly
popular technology of finding valuable drug candidates, by applying a wide range of …

[PDF][PDF] Ligand-based virtual screening using fuzzy correlation coefficient

A Ahmed, A Abdo, N Salim - International Journal of Computer …, 2011 - academia.edu
Selection and identification of a subset of compounds from libraries or databases, which are
likely to possess a desired biological activity is the main target of ligand-based virtual …

Virtual screening applications: a study of ligand-based methods and different structure representations in four different scenarios

DP Hristozov, TI Oprea, J Gasteiger - Journal of computer-aided molecular …, 2007 - Springer
Four different ligand-based virtual screening scenarios are studied:(1) prioritizing
compounds for subsequent high-throughput screening (HTS);(2) selecting a predefined …

New methodologies for ligand-based virtual screening

FL Stahura, J Bajorath - Current pharmaceutical design, 2005 - ingentaconnect.com
Computational screening of compound databases has become increasingly popular in
pharmaceutical research. Virtual screening approaches can roughly be divided into target …

Benchmarking data sets for the evaluation of virtual ligand screening methods: review and perspectives

N Lagarde, JF Zagury, M Montes - Journal of chemical information …, 2015 - ACS Publications
Virtual screening methods are commonly used nowadays in drug discovery processes.
However, to ensure their reliability, they have to be carefully evaluated. The evaluation of …

Machine learning in virtual screening

JL Melville, EK Burke, JD Hirst - Combinatorial chemistry & high …, 2009 - ingentaconnect.com
In this review, we highlight recent applications of machine learning to virtual screening,
focusing on the use of supervised techniques to train statistical learning algorithms to …

Virtual screening data fusion using both structure-and ligand-based methods

F Svensson, A Karlén, C Sköld - Journal of chemical information …, 2012 - ACS Publications
Virtual screening is widely applied in drug discovery, and significant effort has been put into
improving current methods. In this study, we have evaluated the performance of compound …

SABRE: ligand/structure-based virtual screening approach using consensus molecular-shape pattern recognition

NN Wei, A Hamza - 2014 - ACS Publications
We present an efficient and rational ligand/structure shape-based virtual screening
approach combining our previous ligand shape-based similarity SABRE (shape-approach …

Application of the weighted Power-Weakness Ratio (wPWR) as a fusion rule in ligand-based virtual screening

M Cassotti, F Grisoni, S Nembri, R Todeschini - Match, 2016 - boa.unimib.it
Similarity searching, a technique used for ligand-based virtual screening in drug discovery,
exploits the structural information of known active compounds to find new ones with the …

REPROVIS-DB: a benchmark system for ligand-based virtual screening derived from reproducible prospective applications

P Ripphausen, AM Wassermann… - Journal of chemical …, 2011 - ACS Publications
Benchmark calculations are essential for the evaluation of virtual screening (VS) methods.
Typically, classes of known active compounds taken from the medicinal chemistry literature …