Less may be more: an informed reflection on molecular descriptors for drug design and discovery

T Barnard, H Hagan, S Tseng, GC Sosso - Molecular Systems Design …, 2020 - pubs.rsc.org
The phenomenal advances of machine learning in the context of drug design and discovery
have led to the development of a plethora of molecular descriptors. In fact, many of these …

Learning molecular representations for medicinal chemistry: miniperspective

KV Chuang, LM Gunsalus… - Journal of Medicinal …, 2020 - ACS Publications
The accurate modeling and prediction of small molecule properties and bioactivities depend
on the critical choice of molecular representation. Decades of informatics-driven research …

Connecting chemistry and biology through molecular descriptors

A Fernández-Torras, A Comajuncosa-Creus… - Current Opinion in …, 2022 - Elsevier
Through the representation of small molecule structures as numerical descriptors and the
exploitation of the similarity principle, chemoinformatics has made paramount contributions …

Impact of molecular descriptors on computational models

F Grisoni, V Consonni, R Todeschini - Computational chemogenomics, 2018 - Springer
Molecular descriptors encode a wide variety of molecular information and have become the
support of many contemporary chemoinformatic and bioinformatic applications. They grasp …

[HTML][HTML] “DompeKeys”: a set of novel substructure-based descriptors for efficient chemical space mapping, development and structural interpretation of machine …

C Manelfi, V Tazzari, F Lunghini… - Journal of …, 2024 - jcheminf.biomedcentral.com
The conversion of chemical structures into computer-readable descriptors, able to capture
key structural aspects, is of pivotal importance in the field of cheminformatics and computer …

Distinguishing between bioactive and modeled compound conformations through mining of emerging chemical patterns

J Auer, J Bajorath - Journal of chemical information and modeling, 2008 - ACS Publications
To systematically compare bioactive and theoretically derived compound conformations, we
have analyzed 18 different sets of active small molecules with experimentally determined …

From intuition to AI: evolution of small molecule representations in drug discovery

M McGibbon, S Shave, J Dong, Y Gao… - Briefings in …, 2024 - academic.oup.com
Within drug discovery, the goal of AI scientists and cheminformaticians is to help identify
molecular starting points that will develop into safe and efficacious drugs while reducing …

Assessing drug-likeness–what are we missing?

G Vistoli, A Pedretti, B Testa - Drug discovery today, 2008 - Elsevier
The concept of drug-likeness helps to optimise pharmacokinetic and pharmaceutical
properties, for example, solubility, chemical stability, bioavailability and distribution profile. A …

Editor's Perspective: Molecular Descriptor Landscape in the Twenty First Century and its Proper Use for Computer-Aided Drug Design

SC Basak - Current computer-aided drug design, 2019 - ingentaconnect.com
P= f (S) where P is any medicinal or toxicological property of a molecule and S represents
the relevant aspects of the structure that are responsible for the property of interest …

A machine learning approach to explain drug selectivity to soluble and membrane protein targets

E Freyhult, MG Gustafsson… - Molecular …, 2015 - Wiley Online Library
Improved understanding of the forces that determine drug specificity to their targets is
important for drug design and discovery, as well as for gaining knowledge about molecular …