Badapple: promiscuity patterns from noisy evidence

JJ Yang, O Ursu, CA Lipinski, LA Sklar, TI Oprea… - Journal of …, 2016 - Springer
Background Bioassay data analysis continues to be an essential, routine, yet challenging
task in modern drug discovery and chemical biology research. The challenge is to infer …

Machine learning for the structure–energy–property landscapes of molecular crystals

F Musil, S De, J Yang, JE Campbell, GM Day… - Chemical …, 2018 - pubs.rsc.org
Molecular crystals play an important role in several fields of science and technology. They
frequently crystallize in different polymorphs with substantially different physical properties …

AFLOW-XtalFinder: a reliable choice to identify crystalline prototypes

D Hicks, C Toher, DC Ford, F Rose, CD Santo… - npj Computational …, 2021 - nature.com
The accelerated growth rate of repository entries in crystallographic databases makes it
arduous to identify and classify their prototype structures. The open-source AFLOW …

The Chemistry Development Kit (CDK) v2. 0: atom typing, depiction, molecular formulas, and substructure searching

EL Willighagen, JW Mayfield, J Alvarsson… - Journal of …, 2017 - Springer
Abstract Background The Chemistry Development Kit (CDK) is a widely used open source
cheminformatics toolkit, providing data structures to represent chemical concepts along with …

Evolving the materials genome: How machine learning is fueling the next generation of materials discovery

C Suh, C Fare, JA Warren… - Annual Review of …, 2020 - annualreviews.org
Machine learning, applied to chemical and materials data, is transforming the field of
materials discovery and design, yet significant work is still required to fully take advantage of …

[PDF][PDF] Towards crystal structure prediction of complex organic compounds–a report on the fifth blind test

DA Bardwell, CS Adjiman, YA Arnautova… - … Section B: Structural …, 2011 - journals.iucr.org
Following on from the success of the previous crystal structure prediction blind tests
(CSP1999, CSP2001, CSP2004 and CSP2007), a fifth such collaborative project (CSP2010) …

Chemist versus machine: Traditional knowledge versus machine learning techniques

J George, G Hautier - Trends in chemistry, 2021 - cell.com
Chemical heuristics have been fundamental to the advancement of chemistry and materials
science. These heuristics are typically established by scientists using knowledge and …

Identifying duplicate crystal structures: XtalComp, an open-source solution

DC Lonie, E Zurek - Computer Physics Communications, 2012 - Elsevier
We describe the implementation of XtalComp, an efficient, reliable, and open-source library
that tests if two crystal descriptions describe the same underlying structure. The algorithm …

Atomic structures and orbital energies of 61,489 crystal-forming organic molecules

A Stuke, C Kunkel, D Golze, M Todorović, JT Margraf… - Scientific data, 2020 - nature.com
Data science and machine learning in materials science require large datasets of
technologically relevant molecules or materials. Currently, publicly available molecular …

Applications of artificial intelligence and machine learning algorithms to crystallization

C Xiouras, F Cameli, GL Quillo… - Chemical …, 2022 - ACS Publications
Artificial intelligence and specifically machine learning applications are nowadays used in a
variety of scientific applications and cutting-edge technologies, where they have a …