Predicting the predictability: a unified approach to the applicability domain problem of QSAR models

H Dragos, M Gilles, V Alexandre - Journal of chemical information …, 2009 - ACS Publications
The present work proposes a unified conceptual framework to describe and quantify the
important issue of the Applicability Domains (AD) of Quantitative Structure− Activity …

Real external predictivity of QSAR models: how to evaluate it? Comparison of different validation criteria and proposal of using the concordance correlation coefficient

N Chirico, P Gramatica - Journal of chemical information and …, 2011 - ACS Publications
The main utility of QSAR models is their ability to predict activities/properties for new
chemicals, and this external prediction ability is evaluated by means of various validation …

A historical excursus on the statistical validation parameters for QSAR models: a clarification concerning metrics and terminology

P Gramatica, A Sangion - Journal of chemical information and …, 2016 - ACS Publications
In the last years, external validation of QSAR models was the subject of intensive debate in
the scientific literature. Different groups have proposed different metrics to find “the best” …

Real external predictivity of QSAR models. Part 2. New intercomparable thresholds for different validation criteria and the need for scatter plot inspection

N Chirico, P Gramatica - Journal of chemical information and …, 2012 - ACS Publications
The evaluation of regression QSAR model performance, in fitting, robustness, and external
prediction, is of pivotal importance. Over the past decade, different external validation …

Three useful dimensions for domain applicability in QSAR models using random forest

RP Sheridan - Journal of chemical information and modeling, 2012 - ACS Publications
One popular metric for estimating the accuracy of prospective quantitative structure–activity
relationship (QSAR) predictions is based on the similarity of the compound being predicted …

General approach to estimate error bars for quantitative structure–activity relationship predictions of molecular activity

R Liu, KP Glover, MG Feasel… - Journal of Chemical …, 2018 - ACS Publications
Key requirements for quantitative structure–activity relationship (QSAR) models to gain
acceptance by regulatory authorities include a defined domain of applicability (DA) and …

Using random forest to model the domain applicability of another random forest model

RP Sheridan - Journal of chemical information and modeling, 2013 - ACS Publications
In QSAR, a statistical model is generated from a training set of molecules (represented by
chemical descriptors) and their biological activities. We will call this traditional type of QSAR …

[PDF][PDF] External evaluation of QSAR models, in addition to cross-validation: verification of predictive capability on totally new chemicals

P Gramatica - Mol Inform, 2014 - academia.edu
Dear Editors, an interesting paper of Gütlein et al., recently published in your journal,[1] has
reopened the debate on the crucial topic of QSAR model validation, which, over the past …

The relative importance of domain applicability metrics for estimating prediction errors in QSAR varies with training set diversity

RP Sheridan - Journal of Chemical Information and Modeling, 2015 - ACS Publications
In QSAR, a statistical model is generated from a training set of molecules (represented by
chemical descriptors) and their biological activities (an “activity model”). The aim of the field …

Comments on the Definition of the Q2 Parameter for QSAR Validation

V Consonni, D Ballabio… - Journal of chemical …, 2009 - ACS Publications
This paper deals with the problem of evaluating the predictive ability of QSAR models and
continues the discussion about proper estimates of the predictive ability from an external …