Conformational sampling of small molecules with iCon: performance assessment in comparison with OMEGA

G Poli, T Seidel, T Langer - Frontiers in chemistry, 2018 - frontiersin.org
… Herein we present the algorithm and performance assessment … of drug-like small molecules
originating from the Protein … (481 molecules) were used to validate iCon's performance in the …

Quantifying structure and performance diversity for sets of small molecules comprising small-molecule screening collections

PA Clemons, JA Wilson, V Dančík… - Proceedings of the …, 2011 - National Acad Sciences
… measure to assess diversity of performance with a constraint on specificity. Rather than relying
… We find that performance diversity of compound sets is relatively stable across a range of …

Critical assessment of small molecule identification 2016: automated methods

EL Schymanski, C Ruttkies, M Krauss… - Journal of …, 2017 - Springer
… metadata, from organization, participation, results and post-contest evaluation of CASMI
2016 through to perspectives for future contests and small molecule annotation/identification. …

An overall comparison of small molecules and large biologics in ADME testing

H Wan - Admet and Dmpk, 2016 - hrcak.srce.hr
… Relevant tools need to be developed for early DDI assessment of mAbs or ADCs with small
molecules and other biologics for predicting clinical risk. Additionally, it is anticipated that …

Machine learning–Predicting Ames mutagenicity of small molecules

CSM Chu, JD Simpson, PM O'Neill, NG Berry - Journal of Molecular …, 2021 - Elsevier
… and XGB models to have good performance during the 10-fold … molecular properties that
are the most influential for mutagenicity prediction when combined with chemical molecular

OPLS3: a force field providing broad coverage of drug-like small molecules and proteins

E Harder, W Damm, J Maple, C Wu… - Journal of chemical …, 2016 - ACS Publications
… relative to other commonly used small molecule force fields (eg… across performance
benchmarks that assess small molecule … made to both the small molecule and protein force field …

2017 White Paper on recent issues in bioanalysis: aren't BMV guidance/guidelines 'Scientific'? (Part 1 – LCMS: small molecules, peptides and small molecule …

J Welink, E Yang, N Hughes, B Rago, E Woolf… - Bioanalysis, 2017 - Taylor & Francis
… This publication (Part 1) covers the recommendations for small molecules, peptides and
small molecule biomarkers using LCMS. Part 2 (biotherapeutics, biomarkers and …

WaSPred: A reliable AI-based water solubility predictor for small molecules

M Di Stefano, S Galati, C Lonzi, C Granchi… - International Journal of …, 2024 - Elsevier
A rapid and reliable evaluation of the aqueous solubility of small molecules is a hot topic for
the scientific community and represents a field of particular interest in drug discovery. In fact, …

Qualifying a human Liver-Chip for predictive toxicology: Performance assessment and economic implications

L Ewart, A Apostolou, SA Briggs, CV Carman, JT Chaff… - Biorxiv, 2021 - biorxiv.org
… liver injury (DILI) caused by small molecules identified as benchmarks by the IQ consortium.
The … A computational economic value analysis suggests that with this performance the Liver-…

Bioactive conformational generation of small molecules: a comparative analysis between force-field and multiple empirical criteria based methods

F Bai, X Liu, J Li, H Zhang, H Jiang, X Wang, H Li - BMC bioinformatics, 2010 - Springer
… biases, we also tested the performance of the three conformational generation methods in
Performance of the conformational search methods To assess the performance of FFBM …