High-throughput sequencing and morphology perform equally well for benthic monitoring of marine ecosystems

F Lejzerowicz, P Esling, L Pillet, TA Wilding, KD Black… - Scientific reports, 2015 - nature.com
Environmental diversity surveys are crucial for the bioassessment of anthropogenic impacts
on marine ecosystems. Traditional benthic monitoring relying on morphotaxonomic …

DNA metabarcoding for high-throughput monitoring of estuarine macrobenthic communities

J Lobo, S Shokralla, MH Costa, M Hajibabaei… - Scientific reports, 2017 - nature.com
Morphology-based profiling of benthic communities has been extensively applied to aquatic
ecosystems' health assessment. However, it remains a low-throughput, and sometimes …

Advances in metabarcoding techniques bring us closer to reliable monitoring of the marine benthos

M Steyaert, V Priestley, O Osborne… - Journal of Applied …, 2020 - Wiley Online Library
Reliable and accurate biodiversity census methods are essential for monitoring ecosystem
health and assessing potential ecological impacts of future development projects. Although …

Benchmarking DNA metabarcoding for biodiversity-based monitoring and assessment

E Aylagas, Á Borja, X Irigoien… - Frontiers in Marine …, 2016 - frontiersin.org
Characterization of biodiversity has been extensively used to confidently monitor and assess
environmental status. Yet, visual morphology, traditionally and widely used for species …

DNA barcoding and metabarcoding of standardized samples reveal patterns of marine benthic diversity

M Leray, N Knowlton - … of the National Academy of Sciences, 2015 - National Acad Sciences
Documenting the diversity of marine life is challenging because many species are cryptic,
small, and rare, and belong to poorly known groups. New sequencing technologies …

Comparison of markers for the monitoring of freshwater benthic biodiversity through DNA metabarcoding

GF Ficetola, F Boyer, A Valentini, A Bonin… - Molecular …, 2021 - Wiley Online Library
Metabarcoding of bulk or environmental DNA has great potential for biomonitoring of
freshwater environments. However, successful application of metabarcoding to biodiversity …

DNA extraction replicates improve diversity and compositional dissimilarity in metabarcoding of eukaryotes in marine sediments

A Lanzén, K Lekang, I Jonassen, EM Thompson… - PLoS …, 2017 - journals.plos.org
Human impact on marine benthic communities has traditionally been assessed using visible
morphological traits and has focused on the macrobenthos, whereas the ecologically …

Adapting metabarcoding-based benthic biomonitoring into routine marine ecological status assessment networks

E Aylagas, Á Borja, I Muxika, N Rodríguez-Ezpeleta - Ecological Indicators, 2018 - Elsevier
The use of genomic approaches to assist with biodiversity estimations is an alternative to
traditional biomonitoring, which is very time-consuming and costly. In response to the high …

A comparative analysis of metabarcoding and morphology‐based identification of benthic communities across different regional seas

AE Cahill, JK Pearman, A Borja, L Carugati… - Ecology and …, 2018 - Wiley Online Library
In a world of declining biodiversity, monitoring is becoming crucial. Molecular methods, such
as metabarcoding, have the potential to rapidly expand our knowledge of biodiversity …

Benthic monitoring of oil and gas offshore platforms in the North Sea using environmental DNA metabarcoding

F Mauffrey, T Cordier… - Molecular …, 2021 - Wiley Online Library
Since 2010, considerable efforts have been undertaken to monitor the environmental status
of European marine waters and ensuring the development of methodological standards for …