Genome‐based evolutionary history of Pseudomonas spp

C Hesse, F Schulz, CT Bull, BT Shaffer… - Environmental …, 2018 - Wiley Online Library
Pseudomonas is a large and diverse genus of Gammaproteobacteria. To provide a
framework for discovery of evolutionary and taxonomic relationships of these bacteria, we …

[引用][C] Pseudomonas putida: a cosmopolitan opportunist par excellence

KN Timmis - Environmental Microbiology, 2002 - Wiley Online Library
Bacteria of the genus Pseudomonas belong to the gamma subclass of the Proteobacteria
and are chemo-organotrophic aerobic, Gram-negative rods with polar flagella and a …

[HTML][HTML] The Complete Genome Sequence of the Plant Growth-Promoting Bacterium Pseudomonas sp. UW4

J Duan, W Jiang, Z Cheng, JJ Heikkila, BR Glick - PloS one, 2013 - journals.plos.org
The plant growth-promoting bacterium (PGPB) Pseudomonas sp. UW4, previously isolated
from the rhizosphere of common reeds growing on the campus of the University of Waterloo …

Fatty acid and alcohol metabolism in Pseudomonas putida: functional analysis using random barcode transposon sequencing

MG Thompson, MR Incha, AN Pearson… - Applied and …, 2020 - Am Soc Microbiol
With its ability to catabolize a wide variety of carbon sources and a growing engineering
toolkit, Pseudomonas putida KT2440 is emerging as an important chassis organism for …

Engineering multiple genomic deletions in Gram‐negative bacteria: analysis of the multi‐resistant antibiotic profile of Pseudomonas putida KT2440

E Martínez‐García, V de Lorenzo - Environmental microbiology, 2011 - Wiley Online Library
The genome of the soil bacterium Pseudomonas putida strain KT2440 has been erased of
various determinants of resistance to antibiotics encoded in its extant chromosome. To this …

Oxidative stress response in Pseudomonas putida

J Kim, W Park - Applied microbiology and biotechnology, 2014 - Springer
Pseudomonas putida is widely distributed in nature and is capable of degrading various
organic compounds due to its high metabolic versatility. The survival capacity of P. putida …

[HTML][HTML] Genome reduction boosts heterologous gene expression in Pseudomonas putida

S Lieder, PI Nikel, V de Lorenzo, R Takors - Microbial cell factories, 2015 - Springer
Background The implementation of novel platform organisms to be used as microbial cell
factories in industrial applications is currently the subject of intense research. Ongoing …

The metabolic redox regime of Pseudomonas putida tunes its evolvability toward novel xenobiotic substrates

Ö Akkaya, DR Pérez-Pantoja, B Calles, PI Nikel… - MBio, 2018 - Am Soc Microbiol
During evolution of biodegradation pathways for xenobiotic compounds involving Rieske
nonheme iron oxygenases, the transition toward novel substrates is frequently associated …

[HTML][HTML] The Core- and Pan-Genomic Analyses of the Genus Comamonas: From Environmental Adaptation to Potential Virulence

Y Wu, N Zaiden, B Cao - Frontiers in microbiology, 2018 - frontiersin.org
Comamonas is often reported to be one of the major members of microbial communities in
various natural and engineered environments. Versatile catabolic capabilities of …

Candidatus Cloacamonas Acidaminovorans”: Genome Sequence Reconstruction Provides a First Glimpse of a New Bacterial Division

E Pelletier, A Kreimeyer, S Bocs, Z Rouy… - Journal of …, 2008 - Am Soc Microbiol
Many microorganisms live in anaerobic environments. Most of these microorganisms have
not yet been cultivated. Here, we present, from a metagenomic analysis of an anaerobic …