Nematode‐associated microbial taxa do not correlate with host phylogeny, geographic region or feeding morphology in marine sediment habitats

T Schuelke, TJ Pereira, SM Hardy, HM Bik - Molecular ecology, 2018 - Wiley Online Library
Studies of host‐associated microbes are critical for advancing our understanding of ecology
and evolution across diverse taxa and ecosystems. Nematode worms are ubiquitous across …

[HTML][HTML] DNA extraction replicates improve diversity and compositional dissimilarity in metabarcoding of eukaryotes in marine sediments

A Lanzén, K Lekang, I Jonassen, EM Thompson… - PLoS …, 2017 - journals.plos.org
Human impact on marine benthic communities has traditionally been assessed using visible
morphological traits and has focused on the macrobenthos, whereas the ecologically …

[HTML][HTML] Environmental RNA as a tool for marine community biodiversity assessments

MS Giroux, JR Reichman, T Langknecht… - Scientific Reports, 2022 - nature.com
Microscopic organisms are often overlooked in traditional diversity assessments due to the
difficulty of identifying them based on morphology. Metabarcoding is a method for rapidly …

Nematodes alter the taxonomic and functional profiles of benthic bacterial communities: A metatranscriptomic approach

RM Guden, A Haegeman, T Ruttink, T Moens… - Molecular …, 2024 - Wiley Online Library
Marine sediments cover 70% of the Earth's surface, and harbour diverse bacterial
communities critical for marine biogeochemical processes, which affect climate change …

[HTML][HTML] Omics-based ecosurveillance uncovers the influence of estuarine macrophytes on sediment microbial function and metabolic redundancy in a tropical …

RM Shah, S Stephenson, J Crosswell… - Science of The Total …, 2022 - Elsevier
Vertical zonation within estuarine ecosystems can strongly influence microbial diversity and
function by regulating competition, predation, and environmental stability. The degree to …

Capturing drifting species and molecules—Lessons learned from integrated approaches to assess marine metazoan diversity in highly dynamic waters

A Ohnesorge, U John, S Taudien… - Environmental …, 2023 - Wiley Online Library
Marine community diversity surveys require a reliable assessment to estimate ecosystem
functions and their dynamics. For these, non‐invasive environmental DNA (eDNA) …

Metabarcoding successfully tracks temporal changes in eukaryotic communities in coastal sediments

IS Salonen, PM Chronopoulou… - FEMS Microbiology …, 2019 - academic.oup.com
Metabarcoding is a method that combines high-throughput DNA sequencing and DNA-
based identification. Previously, this method has been successfully used to target spatial …

Environmental DNA metabarcoding reveals estuarine benthic community response to nutrient enrichment–Evidence from an in-situ experiment

DE Clark, CA Pilditch, JK Pearman, JI Ellis… - Environmental Pollution, 2020 - Elsevier
Nutrient loading is a major threat to estuaries and coastal environments worldwide,
therefore, it is critical that we have good monitoring tools to detect early signs of degradation …

High‐throughput metabarcoding of eukaryotic diversity for environmental monitoring of offshore oil‐drilling activities

A Lanzén, K Lekang, I Jonassen… - Molecular …, 2016 - Wiley Online Library
As global exploitation of available resources increases, operations extend towards sensitive
and previously protected ecosystems. It is important to monitor such areas in order to detect …

[HTML][HTML] Metabarcoding assessment of prokaryotic and eukaryotic taxa in sediments from Stellwagen Bank National Marine Sanctuary

JM Polinski, JP Bucci, M Gasser, AG Bodnar - Scientific Reports, 2019 - nature.com
Abstract Stellwagen Bank National Marine Sanctuary (SBNMS) in the Gulf of Maine is a
historic fishing ground renowned for remarkable productivity. Biodiversity conservation is a …