Ecological assessment of estuarine sediments by pyrosequencing eukaryotic ribosomal DNA

AA Chariton, LN Court, DM Hartley… - Frontiers in Ecology …, 2010 - Wiley Online Library
Biodiversity assessment underpins our understanding of ecosystems and determines
environmental management decisions on resource use and conservation priorities …

[HTML][HTML] Functional analysis of pristine estuarine marine sediments

RM Shah, KE Hillyer, S Stephenson, J Crosswell… - Science of The Total …, 2021 - Elsevier
Traditional environmental monitoring techniques are well suited to resolving acute exposure
effects but lack resolution in determining subtle shifts in ecosystem functions resulting from …

[HTML][HTML] Integration of DNA-based approaches in aquatic ecological assessment using benthic macroinvertebrates

S Duarte, BR Leite, MJ Feio, FO Costa, AF Filipe - Water, 2021 - mdpi.com
Benthic macroinvertebrates are among the most used biological quality elements for
assessing the condition of all types of aquatic ecosystems worldwide (ie, fresh water …

[HTML][HTML] Digging for DNA at depth: rapid universal metabarcoding surveys (RUMS) as a tool to detect coral reef biodiversity across a depth gradient

JD DiBattista, JD Reimer, M Stat, GD Masucci, P Biondi… - PeerJ, 2019 - peerj.com
Background Effective biodiversity monitoring is fundamental in tracking changes in
ecosystems as it relates to commercial, recreational, and conservation interests. Current …

Biodiversity assessment of tropical shelf eukaryotic communities via pelagic eDNA metabarcoding

J Bakker, OS Wangensteen, C Baillie… - Ecology and …, 2019 - Wiley Online Library
Our understanding of marine communities and their functions in an ecosystem relies on the
ability to detect and monitor species distributions and abundances. Currently, the use of …

Marine sediment infauna‐based environmental assessment using metabarcoding identifies potential impact indicator species

R Hale, A Crampton‐Platt, K Bruce, CQ Tang… - Environmental …, 2024 - Wiley Online Library
Developing large‐scale monitoring strategies for marine habitats with appropriate temporal
and spatial resolution is challenging logistically and economically. We compare potential …

Environmental RNA outperforms eDNA metabarcoding in assessing impact of marine pollution: A chromium-spiked mesocosm test

M Greco, F Lejzerowicz, E Reo, A Caruso, A Maccotta… - Chemosphere, 2022 - Elsevier
Environmental (e) DNA metabarcoding holds great promise for biomonitoring and
ecotoxicological applications. However, few studies have compared the performance of …

Environmental RNA: a revolution in ecological resolution?

MC Yates, AM Derry, ME Cristescu - Trends in Ecology & Evolution, 2021 - cell.com
Current advancements in environmental RNA (eRNA) exploit its relatively fast turnover rate
relative to environmental DNA (eDNA) to assess 'metabolically active'or temporally/spatially …

[HTML][HTML] Microbiome differentiation among coexisting nematode species in estuarine microhabitats: a metagenetic analysis

AM Vafeiadou, S Derycke, A Rigaux… - Frontiers in Marine …, 2022 - frontiersin.org
Resource partitioning is a mechanism for niche differentiation which can facilitate
coexistence of species at local scales. Insights into resource use and niche differentiation of …

Through the e DNA looking glass: Responses of fjord benthic foraminiferal communities to contrasting environmental conditions

I Brinkmann, M Schweizer, D Singer… - Journal of Eukaryotic …, 2023 - Wiley Online Library
The health of coastal marine environments is severely declining with global changes.
Proxies, such as those based on microeukaryote communities, can record biodiversity and …