Temperature driven changes in benthic bacterial diversity influences biogeochemical cycling in coastal sediments

N Hicks, X Liu, R Gregory, J Kenny, A Lucaci… - Frontiers in …, 2018 - frontiersin.org
Marine sediments are important sites for global biogeochemical cycling, mediated by
macrofauna and microalgae. However, it is the microorganisms that drive these key …

Environmental monitoring using next generation sequencing: rapid identification of macroinvertebrate bioindicator species

ME Carew, VJ Pettigrove, L Metzeling, AA Hoffmann - Frontiers in zoology, 2013 - Springer
Introduction Invertebrate communities are central to many environmental monitoring
programs. In freshwater ecosystems, aquatic macroinvertebrates are collected, identified …

The importance of different spatial scales in determining structural and functional characteristics of deep-sea infauna communities

J Ingels, A Vanreusel - Biogeosciences, 2013 - bg.copernicus.org
The urge to understand spatial distributions of species and communities and their causative
processes has continuously instigated the development and testing of conceptual models in …

Patchiness of deep-sea benthic Foraminifera across the Southern Ocean: Insights from high-throughput DNA sequencing

F Lejzerowicz, P Esling, J Pawlowski - Deep Sea Research Part II: Topical …, 2014 - Elsevier
Spatial patchiness is a natural feature that strongly influences the level of species richness
we perceive in surface sediments sampled in the deep-sea. Recent environmental DNA …

Analyzing gene expression from marine microbial communities using environmental transcriptomics

RS Poretsky, S Gifford, J Rinta-Kanto… - JoVE (Journal of …, 2009 - jove.com
Analogous to metagenomics, environmental transcriptomics (metatranscriptomics) retrieves
and sequences environmental mRNAs from a microbial assemblage without prior …

Environmental DNA metabarcoding for monitoring metazoan biodiversity in Antarctic nearshore ecosystems

LJ Clarke, L Suter, BE Deagle, AM Polanowski… - PeerJ, 2021 - peerj.com
Antarctic benthic ecosystems support high biodiversity but their characterization is limited to
a few well-studied areas, due to the extreme environment and remoteness making access …

Monitoring of marine nematode communities through 18S rRNA metabarcoding as a sensitive alternative to morphology

B Tytgat, DT Nguyen, TXP Nguyen, TM Pham… - Ecological …, 2019 - Elsevier
Nematodes are suitable indicators for environmental perturbations because their distribution
is closely linked to sediment characteristics. To evaluate whether DNA-based approaches …

A step towards the validation of bacteria biotic indices using DNA metabarcoding for benthic monitoring

E Aylagas, J Atalah, P Sánchez‐Jerez… - Molecular ecology …, 2021 - Wiley Online Library
Environmental genomics is a promising field for monitoring biodiversity in a timely fashion.
Efforts have increasingly been dedicated to the use of bacteria DNA derived data to develop …

Metabarcoding the Antarctic Peninsula biodiversity using a multi-gene approach

VG Fonseca, A Kirse, H Giebner, BJ Vause… - ISME …, 2022 - academic.oup.com
Marine sediment communities are major contributors to biogeochemical cycling and benthic
ecosystem functioning, but they are poorly described, particularly in remote regions such as …

Biotic signals associated with benthic impacts of salmon farms from eDNA metabarcoding of sediments

X He, SR Gilmore, TF Sutherland… - Molecular …, 2021 - Wiley Online Library
Environmental DNA (eDNA) metabarcoding can rapidly characterize the composition and
diversity of benthic communities, thus it has high potential utility for routine assessments of …