Temperature driven changes in benthic bacterial diversity influences biogeochemical cycling in coastal sediments
Marine sediments are important sites for global biogeochemical cycling, mediated by
macrofauna and microalgae. However, it is the microorganisms that drive these key …
macrofauna and microalgae. However, it is the microorganisms that drive these key …
Environmental monitoring using next generation sequencing: rapid identification of macroinvertebrate bioindicator species
Introduction Invertebrate communities are central to many environmental monitoring
programs. In freshwater ecosystems, aquatic macroinvertebrates are collected, identified …
programs. In freshwater ecosystems, aquatic macroinvertebrates are collected, identified …
The importance of different spatial scales in determining structural and functional characteristics of deep-sea infauna communities
J Ingels, A Vanreusel - Biogeosciences, 2013 - bg.copernicus.org
The urge to understand spatial distributions of species and communities and their causative
processes has continuously instigated the development and testing of conceptual models in …
processes has continuously instigated the development and testing of conceptual models in …
Patchiness of deep-sea benthic Foraminifera across the Southern Ocean: Insights from high-throughput DNA sequencing
Spatial patchiness is a natural feature that strongly influences the level of species richness
we perceive in surface sediments sampled in the deep-sea. Recent environmental DNA …
we perceive in surface sediments sampled in the deep-sea. Recent environmental DNA …
Analyzing gene expression from marine microbial communities using environmental transcriptomics
Analogous to metagenomics, environmental transcriptomics (metatranscriptomics) retrieves
and sequences environmental mRNAs from a microbial assemblage without prior …
and sequences environmental mRNAs from a microbial assemblage without prior …
Environmental DNA metabarcoding for monitoring metazoan biodiversity in Antarctic nearshore ecosystems
Antarctic benthic ecosystems support high biodiversity but their characterization is limited to
a few well-studied areas, due to the extreme environment and remoteness making access …
a few well-studied areas, due to the extreme environment and remoteness making access …
Monitoring of marine nematode communities through 18S rRNA metabarcoding as a sensitive alternative to morphology
Nematodes are suitable indicators for environmental perturbations because their distribution
is closely linked to sediment characteristics. To evaluate whether DNA-based approaches …
is closely linked to sediment characteristics. To evaluate whether DNA-based approaches …
A step towards the validation of bacteria biotic indices using DNA metabarcoding for benthic monitoring
Environmental genomics is a promising field for monitoring biodiversity in a timely fashion.
Efforts have increasingly been dedicated to the use of bacteria DNA derived data to develop …
Efforts have increasingly been dedicated to the use of bacteria DNA derived data to develop …
Metabarcoding the Antarctic Peninsula biodiversity using a multi-gene approach
VG Fonseca, A Kirse, H Giebner, BJ Vause… - ISME …, 2022 - academic.oup.com
Marine sediment communities are major contributors to biogeochemical cycling and benthic
ecosystem functioning, but they are poorly described, particularly in remote regions such as …
ecosystem functioning, but they are poorly described, particularly in remote regions such as …
Biotic signals associated with benthic impacts of salmon farms from eDNA metabarcoding of sediments
X He, SR Gilmore, TF Sutherland… - Molecular …, 2021 - Wiley Online Library
Environmental DNA (eDNA) metabarcoding can rapidly characterize the composition and
diversity of benthic communities, thus it has high potential utility for routine assessments of …
diversity of benthic communities, thus it has high potential utility for routine assessments of …