Assessing the potential of nematode metabarcoding for benthic monitoring of offshore oil platforms

J Pawlowski, K Cermakova, T Cordier… - Science of The Total …, 2024 - Elsevier
Environmental DNA metabarcoding is gaining momentum as a time and cost-effective tool
for biomonitoring and environmental impact assessment. Yet, its use as a replacement for …

Minimal influence of extracellular DNA on molecular surveys of marine sedimentary communities

GA Ramírez, SL Jørgensen, R Zhao… - Frontiers in …, 2018 - frontiersin.org
Extracellular DNA has been reported to comprise a large fraction of total DNA in near-
seafloor sediment. However, the potential effect of extracellular DNA, arising from dead or …

Detecting invertebrate species in archived collections using next‐generation sequencing

ME Carew, L Metzeling, R St Clair… - Molecular Ecology …, 2017 - Wiley Online Library
Invertebrate biodiversity measured at mostly family level is widely used in biological
monitoring programmes to assess anthropogenic impacts on ecosystems. However, next …

Seasonal turnover in community composition of stream‐associated macroinvertebrates inferred from freshwater environmental DNA metabarcoding

M Reinholdt Jensen, E Egelyng Sigsgaard… - Environmental …, 2021 - Wiley Online Library
Macroinvertebrate communities are crucial for biodiversity monitoring and assessment of
ecological status in stream ecosystems. However, traditional monitoring approaches require …

Priming of a DNA metabarcoding approach for species identification and inventory in marine macrobenthic communities

C Hollatz, BR Leite, J Lobo, H Froufe, C Egas… - …, 2017 - cdnsciencepub.com
In marine and estuarine benthic communities, the inventory and estimation of species
richness are often hampered by the need for broad taxonomic expertise across several …

Nitrogen cycling of active bacteria within oligotrophic sediment of the Mid-Atlantic Ridge flank

BK Reese, LA Zinke, MS Sobol, DE LaRowe… - Geomicrobiology …, 2018 - Taylor & Francis
Microbial ecology within oligotrophic marine sediment is poorly understood, yet is critical for
understanding geochemical cycles. Here, 16S rRNA sequences from RNA and DNA inform …

[HTML][HTML] Nematodes as bioindicators of polluted sediments using metabarcoding and microscopic taxonomy

J Schenk, S Höss, M Brinke, N Kleinbölting… - Environment …, 2020 - Elsevier
The use of bioindicator species is a widely applied approach to evaluate ecological
conditions, and several indices have been designed for this purpose. To assess the impact …

[HTML][HTML] Evaluating eDNA and eRNA Metabarcoding for Aquatic Biodiversity Assessment: from Bacteria to Vertebrates

Y Zhang, Y Qiu, K Liu, W Zhong, J Yang… - Environmental Science …, 2024 - Elsevier
The monitoring and management of aquatic ecosystems depend on precise estimates of
biodiversity. Metabarcoding analyses of environmental nucleic acids (eNAs), including …

Unveiling the biodiversity of deep-sea nematodes through metabarcoding: are we ready to bypass the classical taxonomy?

A Dell'Anno, L Carugati, C Corinaldesi, G Riccioni… - PLoS …, 2015 - journals.plos.org
Nematodes inhabiting benthic deep-sea ecosystems account for> 90% of the total metazoan
abundances and they have been hypothesised to be hyper-diverse, but their biodiversity is …

Deep-sea, deep-sequencing: metabarcoding extracellular DNA from sediments of marine canyons

M Guardiola, MJ Uriz, P Taberlet, E Coissac… - PloS one, 2015 - journals.plos.org
Marine sediments are home to one of the richest species pools on Earth, but logistics and a
dearth of taxonomic work-force hinders the knowledge of their biodiversity. We characterized …