Assessing the potential of nematode metabarcoding for benthic monitoring of offshore oil platforms
J Pawlowski, K Cermakova, T Cordier… - Science of The Total …, 2024 - Elsevier
Environmental DNA metabarcoding is gaining momentum as a time and cost-effective tool
for biomonitoring and environmental impact assessment. Yet, its use as a replacement for …
for biomonitoring and environmental impact assessment. Yet, its use as a replacement for …
Minimal influence of extracellular DNA on molecular surveys of marine sedimentary communities
Extracellular DNA has been reported to comprise a large fraction of total DNA in near-
seafloor sediment. However, the potential effect of extracellular DNA, arising from dead or …
seafloor sediment. However, the potential effect of extracellular DNA, arising from dead or …
Detecting invertebrate species in archived collections using next‐generation sequencing
ME Carew, L Metzeling, R St Clair… - Molecular Ecology …, 2017 - Wiley Online Library
Invertebrate biodiversity measured at mostly family level is widely used in biological
monitoring programmes to assess anthropogenic impacts on ecosystems. However, next …
monitoring programmes to assess anthropogenic impacts on ecosystems. However, next …
Seasonal turnover in community composition of stream‐associated macroinvertebrates inferred from freshwater environmental DNA metabarcoding
M Reinholdt Jensen, E Egelyng Sigsgaard… - Environmental …, 2021 - Wiley Online Library
Macroinvertebrate communities are crucial for biodiversity monitoring and assessment of
ecological status in stream ecosystems. However, traditional monitoring approaches require …
ecological status in stream ecosystems. However, traditional monitoring approaches require …
Priming of a DNA metabarcoding approach for species identification and inventory in marine macrobenthic communities
In marine and estuarine benthic communities, the inventory and estimation of species
richness are often hampered by the need for broad taxonomic expertise across several …
richness are often hampered by the need for broad taxonomic expertise across several …
Nitrogen cycling of active bacteria within oligotrophic sediment of the Mid-Atlantic Ridge flank
Microbial ecology within oligotrophic marine sediment is poorly understood, yet is critical for
understanding geochemical cycles. Here, 16S rRNA sequences from RNA and DNA inform …
understanding geochemical cycles. Here, 16S rRNA sequences from RNA and DNA inform …
[HTML][HTML] Nematodes as bioindicators of polluted sediments using metabarcoding and microscopic taxonomy
J Schenk, S Höss, M Brinke, N Kleinbölting… - Environment …, 2020 - Elsevier
The use of bioindicator species is a widely applied approach to evaluate ecological
conditions, and several indices have been designed for this purpose. To assess the impact …
conditions, and several indices have been designed for this purpose. To assess the impact …
[HTML][HTML] Evaluating eDNA and eRNA Metabarcoding for Aquatic Biodiversity Assessment: from Bacteria to Vertebrates
Y Zhang, Y Qiu, K Liu, W Zhong, J Yang… - Environmental Science …, 2024 - Elsevier
The monitoring and management of aquatic ecosystems depend on precise estimates of
biodiversity. Metabarcoding analyses of environmental nucleic acids (eNAs), including …
biodiversity. Metabarcoding analyses of environmental nucleic acids (eNAs), including …
Unveiling the biodiversity of deep-sea nematodes through metabarcoding: are we ready to bypass the classical taxonomy?
Nematodes inhabiting benthic deep-sea ecosystems account for> 90% of the total metazoan
abundances and they have been hypothesised to be hyper-diverse, but their biodiversity is …
abundances and they have been hypothesised to be hyper-diverse, but their biodiversity is …
Deep-sea, deep-sequencing: metabarcoding extracellular DNA from sediments of marine canyons
M Guardiola, MJ Uriz, P Taberlet, E Coissac… - PloS one, 2015 - journals.plos.org
Marine sediments are home to one of the richest species pools on Earth, but logistics and a
dearth of taxonomic work-force hinders the knowledge of their biodiversity. We characterized …
dearth of taxonomic work-force hinders the knowledge of their biodiversity. We characterized …