Predicting the ecological quality status of marine environments from eDNA metabarcoding data using supervised machine learning
Monitoring biodiversity is essential to assess the impacts of increasing anthropogenic
activities in marine environments. Traditionally, marine biomonitoring involves the sorting …
activities in marine environments. Traditionally, marine biomonitoring involves the sorting …
Supervised machine learning outperforms taxonomy‐based environmental DNA metabarcoding applied to biomonitoring
T Cordier, D Forster, Y Dufresne… - Molecular ecology …, 2018 - Wiley Online Library
Biodiversity monitoring is the standard for environmental impact assessment of
anthropogenic activities. Several recent studies showed that high‐throughput amplicon …
anthropogenic activities. Several recent studies showed that high‐throughput amplicon …
[HTML][HTML] Benchmarking DNA metabarcoding for biodiversity-based monitoring and assessment
Characterization of biodiversity has been extensively used to confidently monitor and assess
environmental status. Yet, visual morphology, traditionally and widely used for species …
environmental status. Yet, visual morphology, traditionally and widely used for species …
[HTML][HTML] eDNA metabarcoding in zooplankton improves the ecological status assessment of aquatic ecosystems
J Yang, X Zhang - Environment international, 2020 - Elsevier
Aquatic ecosystems are monitored worldwide using a range of biological quality elements
that are morphologically identified. The environmental DNA (eDNA)-based approach has …
that are morphologically identified. The environmental DNA (eDNA)-based approach has …
A cross-taxa study using environmental DNA/RNA metabarcoding to measure biological impacts of offshore oil and gas drilling and production operations
Standardized ecosystem-based monitoring surveys are critical for providing information on
marine ecosystem health. Environmental DNA/RNA (eDNA/eRNA) metabarcoding may …
marine ecosystem health. Environmental DNA/RNA (eDNA/eRNA) metabarcoding may …
[HTML][HTML] Validating metabarcoding-based biodiversity assessments with multi-species occupancy models: a case study using coastal marine eDNA
Environmental DNA (eDNA) metabarcoding is an increasingly popular method for rapid
biodiversity assessment. As with any ecological survey, false negatives can arise during …
biodiversity assessment. As with any ecological survey, false negatives can arise during …
[HTML][HTML] Metabarcoding monitoring analysis: the pros and cons of using co-extracted environmental DNA and RNA data to assess offshore oil production impacts on …
Sequencing environmental DNA (eDNA) is increasingly being used as an alternative to
traditional morphological-based identification to characterize biological assemblages and …
traditional morphological-based identification to characterize biological assemblages and …
[HTML][HTML] The future of biotic indices in the ecogenomic era: Integrating (e) DNA metabarcoding in biological assessment of aquatic ecosystems
The bioassessment of aquatic ecosystems is currently based on various biotic indices that
use the occurrence and/or abundance of selected taxonomic groups to define ecological …
use the occurrence and/or abundance of selected taxonomic groups to define ecological …
[HTML][HTML] Integration of DNA-based approaches in aquatic ecological assessment using benthic macroinvertebrates
Benthic macroinvertebrates are among the most used biological quality elements for
assessing the condition of all types of aquatic ecosystems worldwide (ie, fresh water …
assessing the condition of all types of aquatic ecosystems worldwide (ie, fresh water …
[HTML][HTML] DNA metabarcoding for high-throughput monitoring of estuarine macrobenthic communities
Morphology-based profiling of benthic communities has been extensively applied to aquatic
ecosystems' health assessment. However, it remains a low-throughput, and sometimes …
ecosystems' health assessment. However, it remains a low-throughput, and sometimes …